View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_23 (Length: 483)
Name: NF0841_low_23
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 96 - 471
Target Start/End: Complemental strand, 15483856 - 15483481
Alignment:
| Q |
96 |
tgttaatgttgtaatattgtgttattgagtcagcttttgttatgggtgtttacaaaatagtcgtgtgtatttcaatatgtattattcaataaaatttgtg |
195 |
Q |
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| T |
15483856 |
tgttaatgttgtaatattgtgttattgagtcagcttttgttatgggtgtttacaaaatagtcgtgtgtatttcaatatgtattattcaataaaatttgtg |
15483757 |
T |
|
| Q |
196 |
agatcgttatgttcattttctaagttctaaaacaattttattttctactcttgttgtgagtgatggtataatcagtgtgtaattcatggaagcgagtgct |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
15483756 |
agatcgttatgttcattttctaagttctaaaacaattttattttctactcttgttgtgagtgatggtataatcagtgtgtaattcatagaagcgagtgct |
15483657 |
T |
|
| Q |
296 |
tgttccaacaaattggtataagtgagcgattcgttatggaaacattctctttgcagcgattccatcttttaaattaaggagtaaataagcaattaccctc |
395 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15483656 |
tgttccaacaaattggtataagtgagcgattcgatatggaaacattctctttgcagcgattccatcttttaaattaaggagtaaataagcaattaccctc |
15483557 |
T |
|
| Q |
396 |
caaaattaaagtctttttacgtttgtttgccataaatggttttatccaattttgaccataaaactcaaaggattca |
471 |
Q |
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| T |
15483556 |
caaaattaaagtctttttacgtttgtttgccataaatggttttatccaattttgaccataaaactcaaaggattca |
15483481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 322
Target Start/End: Complemental strand, 15615912 - 15615837
Alignment:
| Q |
249 |
ttgtgagtgatggtataatcagtgtgtaattcatggaagcgagtgcttgttccaac--aaattggtataagtgagc |
322 |
Q |
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| T |
15615912 |
ttgtgagtgattgtagaaccagtgtgtgattcatgcaagtgagagcttgttccagcgaaaattggtattagtgagc |
15615837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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