View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_24 (Length: 479)
Name: NF0841_low_24
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Complemental strand, 41367403 - 41366968
Alignment:
| Q |
30 |
catgttagcagatttttgccttggtgaatgatatgatgctaaatggaacctgaaaaatgaataactaaacgattataaatatgttaatctattaaaaaca |
129 |
Q |
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| T |
41367403 |
catgttagcagatttttgccttggtgaatgatatgatgctaaatggaacctgaaaaatgaataactaaatgaatataaatatattaatctattaaaaaca |
41367304 |
T |
|
| Q |
130 |
atgtannnnnnnnnnnncctgtactacctttgctttctaacttaattgatgttatttagtttgttgactgaattataagcaatttcactttcacatgctt |
229 |
Q |
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| T |
41367303 |
atgtatgtgtgtgtgt--ctgtactacctttgctttctaacttaattgatgttatttagtttgttgactgaattataagcaatttcactttcacatgctt |
41367206 |
T |
|
| Q |
230 |
ggtatgcttgttaattggtatattttctaattatgactgaattataagcaatttatagataccaactcttcagttgtgnnnnnnnnnnnnnnnncaataa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
41367205 |
ggtatgcttgttaattggtatattttctaattatgactgaattataagcaatttatagataccaactcttcagttgtgtttttatttttgttttcaataa |
41367106 |
T |
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| Q |
330 |
tattatatgttgactattgttttcatatagttcaaaatgttttggagttgagaattttctgctagtgagatcgaaaagttctttcaagcccaattcgatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41367105 |
tattatatgttgactattgttttcatatagttcaaaatgttttggagttgagaattttctgctagtgagatcgaaaagttctttcaagcccaattcgatt |
41367006 |
T |
|
| Q |
430 |
agtttgttatgtcagttaattgattacagtttgatatt |
467 |
Q |
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| T |
41367005 |
agtttgttatgtcagttaatttattacagtttgttatt |
41366968 |
T |
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