View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_25 (Length: 479)
Name: NF0841_low_25
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_25 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 26013763 - 26014098
Alignment:
| Q |
12 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgagaaaaacaccaaaataataagaaaaatacttctttgatccatatataactttgta |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26013763 |
agagaggtattaacgtggtgttgcacttctcaatcaatgaatcgagaaaagcaccaaaataataagaaaaatacttctttgatccatatataactttgta |
26013862 |
T |
|
| Q |
112 |
aataggcatataaaattaaagctagaagacaaatgtacatatgaatgaaaaccgaataaaatgaccctattaatggatccactgttgaaccaaataaaac |
211 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
26013863 |
aataggcatataaaattaaagccagaagacaaatgtacagatgaatgaaaaccgaataaaatgaccctattaatggatccacggatgaaccaaataaaac |
26013962 |
T |
|
| Q |
212 |
aaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatttcatacatacaattgcagcagaattataaataagacgaat |
311 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
26013963 |
aaaaattcaagattatgtacaagttgttacgatgagtattaaccaacagagttatcgatttcatacgtacaattgcagcaaaattataaataagacgaat |
26014062 |
T |
|
| Q |
312 |
ccgagttcataaaaacaatgaatttagagacaaaat |
347 |
Q |
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| T |
26014063 |
tcgagttcataaaaacaatgaatttagagacaaaat |
26014098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 19721 - 20055
Alignment:
| Q |
12 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgagaaaaacaccaaaataataagaaaaatacttctttgatccatatataactttgta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
19721 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgacaaaagcaccaaaataataagaaaa-tacttctttgatccatatataactttata |
19819 |
T |
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| Q |
112 |
aataggcatataaaattaaagctagaagacaaatgtacatatgaatgaaaaccgaataaaatgaccctattaatggatccactgttgaaccaaataaaac |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
19820 |
aataggcatataaaattaaagctagaagacaaatgtacagatgaatgataaccgaataaaattaccctattaatggatctactgatgaaccaaataaaac |
19919 |
T |
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| Q |
212 |
aaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatttcatacatacaattgcagcagaattataaataagacgaat |
311 |
Q |
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| T |
19920 |
aaaaattcaagactatgtacaagttgttacgatgagtattaaccaacagagttatcgatttcatacatacaattgcagcagaattataaataagacgaat |
20019 |
T |
|
| Q |
312 |
ccgagttcataaaaacaatgaatttagagacaaaat |
347 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
20020 |
tcgagttcataaaaacaatgaatttagagacaaaat |
20055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 14981245 - 14980906
Alignment:
| Q |
12 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgagaaaaacaccaaaataataagaaaaatacttctttgatccatatataactttgta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14981245 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgagaaaagcaccaaaataataagaaaaatacttctttgatccatatataactctgta |
14981146 |
T |
|
| Q |
112 |
aatag----gcatataaaattaaagctagaagacaaatgtacatatgaatgaaaaccgaataaaatgaccctattaatggatccactgttgaaccaaata |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
14981145 |
aatagctaggcatataaaattaaagctagaagacaaatgtacagatgaatgaaaaccgaataaaatgaccctattaatggatccacggatgaaccaaata |
14981046 |
T |
|
| Q |
208 |
aaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatttcatacatacaattgcagcagaattataaataagac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
14981045 |
aaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccaacagagttatcgatttcatacgtacaattgcagtagaattataaataagac |
14980946 |
T |
|
| Q |
308 |
gaatccgagttcataaaaacaatgaatttagagacaaaat |
347 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
14980945 |
gaatttgagttcataaaaacaatgaatttagagacaaaat |
14980906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 15410721 - 15410382
Alignment:
| Q |
12 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgagaaaaacaccaaaataataagaaaaatacttctttgatccatatataactttgta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15410721 |
agagaggtattaacgtggtgttgcagttctcaatcaatgaatcgagaaaagcaccaaaataataagaaaaatacttctttgatccatatataactctgta |
15410622 |
T |
|
| Q |
112 |
aatag----gcatataaaattaaagctagaagacaaatgtacatatgaatgaaaaccgaataaaatgaccctattaatggatccactgttgaaccaaata |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
15410621 |
aatagctaggcatataaaattaaagctagaagacaaatgtacagatgaatgaaaaccgaataaaatgaccctattaatggatccacggatgaaccaaata |
15410522 |
T |
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| Q |
208 |
aaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccagcagagttatcgatttcatacatacaattgcagcagaattataaataagac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
15410521 |
aaacaaaaattcaagactatgtacaagttgttacgatgagtattaaccaacagagttatcgatttcatacgtacaattgcagtagaattataaataagac |
15410422 |
T |
|
| Q |
308 |
gaatccgagttcataaaaacaatgaatttagagacaaaat |
347 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
15410421 |
gaatttgagttcataaaaacaatgaatttagagacaaaat |
15410382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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