View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_26 (Length: 475)
Name: NF0841_low_26
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 68 - 469
Target Start/End: Original strand, 40451066 - 40451467
Alignment:
| Q |
68 |
atcatcacaatttaggcaataagggtcagaacggatggtcaaaatcctcaatgtggaggtagcaatggtgatttgcttgatgtacaaccaatagcaatag |
167 |
Q |
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| T |
40451066 |
atcatcacaatttaggcaataagggtcagaacggatggtcaaaatcctcaatgtggaggtagcaatggtgatttgcttgatgtacaaccaatagcaatag |
40451165 |
T |
|
| Q |
168 |
ttcaaagtcaaatcttgtaggacagggcacccctcagnnnnnnnttgtttacttgacttgtcactttcaaaggtagcatatgaaagatttaaagtcttga |
267 |
Q |
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| T |
40451166 |
ttcaaagtcaattcttgtaggacagggcacccctcagaaaaaaattgtttaattgacttgtcactttcaaaggtagcatatgaaagatttaaagtcttga |
40451265 |
T |
|
| Q |
268 |
gggtagggaatcgaataccggtaggaataattagtgtaaagccgccaagttgtaacgataggttagtctatgagtgagaagttgagaaacaacggggtaa |
367 |
Q |
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| T |
40451266 |
gggtagggaatagaataccggtaggaataaatagtgtaaagccgccaagttgtaatgatagtttagtcaatgagtgagaagttgagaaacaacggggtaa |
40451365 |
T |
|
| Q |
368 |
cacacaagtagtatttagatattttatatcatttatggaaagttgcaggtgctgaactttgtgggtaagtagagcagatagtcaagaagtgagtttgcgt |
467 |
Q |
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| T |
40451366 |
cacacaagtggtatttcgatattttatatcatttatgaaaagttgaaggtgctgaactttgtgggtaagtagagaagatagtaaagaagtaagtttgcgt |
40451465 |
T |
|
| Q |
468 |
gc |
469 |
Q |
| |
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|| |
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| T |
40451466 |
gc |
40451467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 68 - 392
Target Start/End: Complemental strand, 40276245 - 40275920
Alignment:
| Q |
68 |
atcatcacaatttaggcaataagggtcagaacggatggtcaaaatcctcaatgtggaggtagcaatggtgatttgcttgatgtacaaccaatagcaatag |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40276245 |
atcatcacaatttaggcaataagggtcagaacggatggtcaaaatcctcaatgtggaggtagcaatggtgatttgcttgatgtacaaccaacagcaatag |
40276146 |
T |
|
| Q |
168 |
ttcaaagtcaaatcttgtaggacagggcacccctcag-nnnnnnnttgtttacttgacttgtcactttcaaaggtagcatatgaaagatttaaagtcttg |
266 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40276145 |
ttcaaagtcaattcttgtaggacagggcacccctcagaaaaaaaattgttcaattgatttgtcactttcaaaggtagcatatgaacgatttaaagttttg |
40276046 |
T |
|
| Q |
267 |
agggtagggaatcgaataccggtaggaataattagtgtaaagccgccaagttgtaacgataggttagtctatgagtgagaagttgagaaacaacggggta |
366 |
Q |
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|||||||||||||||||| | |||||||||| ||| |||||||| ||||| ||||||||||| |||||| |||||||||| |||||||||| |||| ||| |
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| T |
40276045 |
agggtagggaatcgaatatctgtaggaataaatagagtaaagccaccaagatgtaacgatagtttagtcaatgagtgagatgttgagaaactacggcgta |
40275946 |
T |
|
| Q |
367 |
acacacaagtagtatttagatatttt |
392 |
Q |
| |
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|||||||||| |||||| ||||||| |
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|
| T |
40275945 |
acacacaagtggtatttcaatatttt |
40275920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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