View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_29 (Length: 465)

Name: NF0841_low_29
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_29
NF0841_low_29
[»] chr4 (1 HSPs)
chr4 (76-436)||(44396176-44396536)
[»] chr1 (4 HSPs)
chr1 (76-175)||(6971263-6971362)
chr1 (304-408)||(6971464-6971568)
chr1 (77-178)||(6968452-6968553)
chr1 (319-403)||(2177979-2178063)
[»] chr2 (2 HSPs)
chr2 (299-408)||(11450193-11450302)
chr2 (88-175)||(11450024-11450111)
[»] chr6 (14 HSPs)
chr6 (319-431)||(2832936-2833048)
chr6 (97-179)||(2842386-2842468)
chr6 (97-179)||(2865840-2865922)
chr6 (97-179)||(2885030-2885112)
chr6 (319-431)||(2829166-2829278)
chr6 (319-431)||(2842572-2842684)
chr6 (319-431)||(2909643-2909754)
chr6 (97-184)||(2829028-2829115)
chr6 (84-179)||(2833152-2833247)
chr6 (358-413)||(14451610-14451665)
chr6 (290-436)||(2860195-2860341)
chr6 (97-179)||(2860461-2860543)
chr6 (290-436)||(2865580-2865726)
chr6 (290-436)||(2884770-2884916)
[»] chr7 (2 HSPs)
chr7 (76-178)||(1800933-1801035)
chr7 (359-413)||(31667226-31667280)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 76 - 436
Target Start/End: Original strand, 44396176 - 44396536
Alignment:
Q  76 gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44396176 gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga 44396275  T
Q  176 agaaaaaaggtgaaagtaagnnnnnnnctgatgatgagaacgaaaataaggctaattttgatgctgtgaggaaggaggtgaaggaagaaggaagtggcag 275  Q
    ||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44396276 agaaaaaaggtgaaagtaagtttttttctgatgatgagaatgaaaataaggctaattttgatgctgtgaggaaggaggtgaaggaagaaggaagtggtag 44396375  T
Q  276 tggtagtgggggtgggaatagcaaagtgacactttcaggtctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttc 375  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44396376 tggtagtgggggtgggaatagcaaagtgacactttcagggctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttc 44396475  T
Q  376 acaacaaattatgtggagaagcttgatcctgcacttataaggaggggtagaatggacaaac 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44396476 acaacaaattatgtggagaagcttgatcctgcacttataaggaggggtagaatggacaaac 44396536  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 6971263 - 6971362
Alignment:
Q  76 gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga 175  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||| || ||||| |||||||| |||||||||||||||||| | || ||||||||||    
T  6971263 gataacactgagttgaggaagcttttgattgagacatcaagtaagtctataattgtgattgaagatattgattgttcacttgatttgactggtcaaagga 6971362  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 408
Target Start/End: Original strand, 6971464 - 6971568
Alignment:
Q  304 acactttcaggtctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatc 403  Q
    |||||||| || ||| ||||||||||||||||  ||||||| || ||||| ||||||||  | ||||||||||||||||||||||| |||||  | ||||    
T  6971464 acactttctggactactgaatttcattgatggattatggtctgcatgtggtggtgaaagacttattgttttcacaacaaattatgttgagaaattggatc 6971563  T
Q  404 ctgca 408  Q
    |||||    
T  6971564 ctgca 6971568  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 6968452 - 6968553
Alignment:
Q  77 ataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaa 176  Q
    ||||| ||||||| ||||| ||||||||||  |  || ||||||||| || ||||||| ||||| ||||||||||| ||||||||||| ||||| |||||    
T  6968452 ataatgctgagttaaggaaacttttgattggaatcacgagtaagtcagttgttgttatagaagatattgattgttcgcttgatcttaccggtcagaggaa 6968551  T
Q  177 ga 178  Q
    ||    
T  6968552 ga 6968553  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 2177979 - 2178063
Alignment:
Q  319 ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatc 403  Q
    ||||||||||||||||| || ||||||||| ||   ||||| ||||||||| | ||||| || || |||| |||||| |||||||    
T  2177979 ttgaatttcattgatgggatttggtcagctagtactggtgagaggttaattatattcactactaactatgcggagaaacttgatc 2178063  T

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Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 299 - 408
Target Start/End: Original strand, 11450193 - 11450302
Alignment:
Q  299 aagtgacactttcaggtctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagct 398  Q
    |||| |||||||| || ||||||||||||||||||||  ||||||| |||||||| ||||||||  | || ||||||||||||||||||||||||||  |    
T  11450193 aagtaacactttctgggctattgaatttcattgatggactatggtctgcttgtggtggtgaaagacttatagttttcacaacaaattatgtggagaaatt 11450292  T
Q  399 tgatcctgca 408  Q
     |||||||||    
T  11450293 ggatcctgca 11450302  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 11450024 - 11450111
Alignment:
Q  88 ttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga 175  Q
    ||||||||||||||||||||||   ||||||| || || ||||| |||||||| || ||||||||||||||| | || ||||||||||    
T  11450024 ttgaggaagcttttgattgagatatcaagtaaatctataattgtgattgaagatatagattgttcacttgatttgactggtcaaagga 11450111  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 431
Target Start/End: Complemental strand, 2833048 - 2832936
Alignment:
Q  319 ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttataagga 418  Q
    ||||||||||||||||| || |||||||| ||||||   || ||| ||||  ||||||||||||||| |||||| || ||||||||||| ||||||||||    
T  2833048 ttgaatttcattgatggaatttggtcagcatgtggatcagagaggataataattttcacaacaaattttgtggacaaacttgatcctgctcttataagga 2832949  T
Q  419 ggggtagaatgga 431  Q
    |||| ||||||||    
T  2832948 ggggaagaatgga 2832936  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 2842386 - 2842468
Alignment:
Q  97 cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa 179  Q
    ||||||||||||||  | ||||| || ||||||||||||||||| ||||||||||| || ||||| || || |||||||||||    
T  2842386 cttttgattgagacgtcgagtaaatcgattattgttattgaagatattgattgttctctcgatctcaccgggcaaaggaagaa 2842468  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 2865922 - 2865840
Alignment:
Q  97 cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa 179  Q
    ||||||||||||||  | || || ||| |||| ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||    
T  2865922 cttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattgttctcttgagcttaccggtcaaaggaagaa 2865840  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 2885112 - 2885030
Alignment:
Q  97 cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa 179  Q
    ||||||||||||||  |||| || ||| |||| ||||||||||| ||||||||||| || || ||||| ||||||||||||||    
T  2885112 cttttgattgagacgtcaagcaaatcagttatcgttattgaagatattgattgttctctcgagcttactggtcaaaggaagaa 2885030  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 431
Target Start/End: Original strand, 2829166 - 2829278
Alignment:
Q  319 ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttataagga 418  Q
    |||||||| |||||||| || ||||| || |||||||| || ||| | ||  ||||||||||||||| |||||| || ||||||||||| || || ||||    
T  2829166 ttgaattttattgatgggatttggtctgcatgtggaggagagaggatcataattttcacaacaaattttgtggacaaacttgatcctgccctaattagga 2829265  T
Q  419 ggggtagaatgga 431  Q
    |||| || |||||    
T  2829266 ggggaaggatgga 2829278  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 431
Target Start/End: Original strand, 2842572 - 2842684
Alignment:
Q  319 ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttataagga 418  Q
    |||||||| |||||||| || |||||||| ||||||   || ||| | ||  |||||||||| |||| |||||| || ||||||||||| ||||||||||    
T  2842572 ttgaattttattgatggaatttggtcagcatgtggatcagagaggatcataattttcacaactaattttgtggataaacttgatcctgctcttataagga 2842671  T
Q  419 ggggtagaatgga 431  Q
    | || ||||||||    
T  2842672 gaggaagaatgga 2842684  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 431
Target Start/End: Complemental strand, 2909754 - 2909643
Alignment:
Q  319 ttgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttataagga 418  Q
    |||||||| |||||||| || |||||| | |||||||| |||||| | ||  ||| |||||| |||| |||||| || ||||||||||| ||||||||||    
T  2909754 ttgaattttattgatggaatttggtcaacatgtggaggagaaaggatcataattt-cacaactaattttgtggacaaacttgatcctgctcttataagga 2909656  T
Q  419 ggggtagaatgga 431  Q
    |||| || |||||    
T  2909655 ggggaaggatgga 2909643  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 184
Target Start/End: Original strand, 2829028 - 2829115
Alignment:
Q  97 cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaaaaaag 184  Q
    |||||||| |||||  | ||||| || ||||| ||||||||||| ||||||||||| |||||||| || || ||||| ||||| ||||    
T  2829028 cttttgatcgagacgtcgagtaaatcgattatagttattgaagatattgattgttctcttgatctcaccggccaaagaaagaagaaag 2829115  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 2833247 - 2833152
Alignment:
Q  84 tgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa 179  Q
    |||||||| ||  ||||||||||| ||  ||||||| || ||||| ||||| ||||| ||||||||||| || ||||| || || |||||||||||    
T  2833247 tgagttgaagagacttttgattgaaacgtcaagtaaatcgattatagttatcgaagatattgattgttctctcgatctcactgggcaaaggaagaa 2833152  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 14451665 - 14451610
Alignment:
Q  358 gaaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttat 413  Q
    |||||||| ||||||||| |||  ||| ||||| ||||||||||||||||||||||    
T  14451665 gaaaggttgattgttttcgcaaataataatgtgtagaagcttgatcctgcacttat 14451610  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 436
Target Start/End: Complemental strand, 2860341 - 2860195
Alignment:
Q  290 ggaatagcaaagtgacactttcaggtctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgt 389  Q
    |||| ||||| || || ||||| ||| | |||||||  |||||||| || |||||| | |||||||| ||| || | ||  |||||||||| |||| |||    
T  2860341 ggaaaagcaaggtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgt 2860242  T
Q  390 ggagaagcttgatcctgcacttataaggaggggtagaatggacaaac 436  Q
    ||| || ||||||||||| || || |||||||| || ||||| ||||    
T  2860241 ggacaaacttgatcctgctctaattaggaggggaaggatggataaac 2860195  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 2860543 - 2860461
Alignment:
Q  97 cttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaaggaagaa 179  Q
    ||||||||||||||  | || || ||| |||| ||||||||||| ||||||||||| || || ||||| ||||| ||||||||    
T  2860543 cttttgattgagacgtcgagcaaatcagttatcgttattgaagatattgattgttctctcgagcttaccggtcagaggaagaa 2860461  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 436
Target Start/End: Complemental strand, 2865726 - 2865580
Alignment:
Q  290 ggaatagcaaagtgacactttcaggtctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgt 389  Q
    |||| ||||| || || ||||| ||| | |||||||  |||||||| || |||||| | |||||||| ||| || | ||  |||||||||| |||| |||    
T  2865726 ggaaaagcaatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgt 2865627  T
Q  390 ggagaagcttgatcctgcacttataaggaggggtagaatggacaaac 436  Q
    ||| || ||||||||||| || || |||||||| || ||||| ||||    
T  2865626 ggacaaacttgatcctgctctaattaggaggggaaggatggataaac 2865580  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 436
Target Start/End: Complemental strand, 2884916 - 2884770
Alignment:
Q  290 ggaatagcaaagtgacactttcaggtctattgaatttcattgatggtatatggtcagcttgtggaggtgaaaggttaattgttttcacaacaaattatgt 389  Q
    |||| ||||| || || ||||| ||| | |||||||  |||||||| || |||||| | |||||||| ||| || | ||  |||||||||| |||| |||    
T  2884916 ggaaaagcaatgtaactctttcgggtttgttgaattctattgatggaatttggtcatcatgtggaggagaacggatcataattttcacaactaattttgt 2884817  T
Q  390 ggagaagcttgatcctgcacttataaggaggggtagaatggacaaac 436  Q
    ||| || ||||||||||| || || |||||||| || ||||| ||||    
T  2884816 ggacaaacttgatcctgctctaattaggaggggaaggatggataaac 2884770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 1800933 - 1801035
Alignment:
Q  76 gataatactgagttgaggaagcttttgattgagactacaagtaagtcaattattgttattgaagacattgattgttcacttgatcttacaggtcaaagga 175  Q
    |||||||| ||||| || ||| | || ||||||||| | |||||  | ||||| ||| ||||||| |||||||||||||||||| ||||  | |||||||    
T  1800933 gataataccgagttaagaaagttgttaattgagacttctagtaaagctattatagttgttgaagatattgattgttcacttgattttactagccaaagga 1801032  T
Q  176 aga 178  Q
    |||    
T  1801033 aga 1801035  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 31667280 - 31667226
Alignment:
Q  359 aaaggttaattgttttcacaacaaattatgtggagaagcttgatcctgcacttat 413  Q
    ||||||| ||||||||| |||  ||| ||||| ||||||||||||||||||||||    
T  31667280 aaaggttgattgttttcgcaaataataatgtgtagaagcttgatcctgcacttat 31667226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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