View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_3 (Length: 935)

Name: NF0841_low_3
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_3
NF0841_low_3
[»] chr2 (6 HSPs)
chr2 (445-841)||(26661746-26662144)
chr2 (114-347)||(26661410-26661646)
chr2 (620-827)||(26666163-26666368)
chr2 (212-339)||(6049912-6050043)
chr2 (701-770)||(26662301-26662370)
chr2 (768-821)||(26665145-26665198)
[»] chr6 (4 HSPs)
chr6 (114-347)||(21481328-21481564)
chr6 (445-617)||(21481663-21481839)
chr6 (217-347)||(19701164-19701298)
chr6 (701-762)||(19702539-19702600)
[»] chr7 (2 HSPs)
chr7 (138-333)||(13331531-13331727)
chr7 (138-333)||(13342446-13342642)
[»] chr5 (1 HSPs)
chr5 (138-333)||(5672002-5672198)
[»] chr8 (4 HSPs)
chr8 (138-347)||(32717808-32718020)
chr8 (138-347)||(10637574-10637786)
chr8 (768-821)||(10641344-10641397)
chr8 (768-821)||(32714210-32714263)
[»] chr1 (5 HSPs)
chr1 (138-347)||(22893729-22893941)
chr1 (701-770)||(22902560-22902629)
chr1 (694-769)||(46886067-46886142)
chr1 (212-339)||(44306129-44306259)
chr1 (768-821)||(21532599-21532652)
[»] chr3 (1 HSPs)
chr3 (155-333)||(15761973-15762154)
[»] scaffold0586 (1 HSPs)
scaffold0586 (217-347)||(9597-9731)
[»] chr4 (1 HSPs)
chr4 (229-339)||(13893697-13893810)
[»] scaffold0697 (1 HSPs)
scaffold0697 (768-821)||(3557-3610)


Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 445 - 841
Target Start/End: Original strand, 26661746 - 26662144
Alignment:
Q  445 ccactgtttggcaattcttgttttttcctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taacttttc 541  Q
    |||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||| ||||||||   ||||||||     
T  26661746 ccactgtttggcaattcttgttttttcccaatcatgaatcaatg-aaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  542 ccaaaatatgccaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagtctgtgttataactctaattttga 641  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtgttataactctaattttga 26661944  T
Q  642 aaatgaagtatataacatgttcttttttcaacttttatactgcttaatattttccatagatgatgttcccaaatgtgacatattatttaagaaagtgaga 741  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  26661945 aaatgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaaatgtgacatattatctaagaaagtgaga 26662044  T
Q  742 tttgtcaaatttggaatcactatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctattggttgtgtatctagaaccatgt 841  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662045 tttgtcaaatttggaatcattatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctattggttgtgtatctagaaccatgt 26662144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 114 - 347
Target Start/End: Original strand, 26661410 - 26661646
Alignment:
Q  114 atctccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661410 atctccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 26661509  T
Q  214 actcatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccatt 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||    
T  26661510 acccatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccatt 26661609  T
Q  311 actcaacatagatttggtgattgatatcaattctctg 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  26661610 actcaacatagatttggtgattgatatcaattctctg 26661646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 620 - 827
Target Start/End: Original strand, 26666163 - 26666368
Alignment:
Q  620 tgtgttataactctaattttgaaaatgaagtatataacatgttcttttttcaacttttatactgcttaatattttccatagatgatgttcccaaatgtga 719  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  26666163 tgtgttataactctaattttgaaa-tgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaagtgtga 26666261  T
Q  720 catattatttaagaaagtgagatttgtcaaatttggaatcactatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctatt 819  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26666262 catattatctaagaaagtgagatttgtcaaatttggaatcactatata-ttattagttgtgtaatgacatcaattatactttgaattcatttactctatt 26666360  T
Q  820 ggttgtgt 827  Q
    ||||||||    
T  26666361 ggttgtgt 26666368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 6049912 - 6050043
Alignment:
Q  212 aaactcatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttcc 307  Q
    |||| ||| ||||||||| ||| |||||||||||||| | || |||| | ||||||||||||||    ||||||||||| |||||| |   |||||||||    
T  6049912 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttcc 6050011  T
Q  308 attactcaacatagatttggtgattgatatca 339  Q
    ||||||||||||||||||||||||||||||||    
T  6050012 attactcaacatagatttggtgattgatatca 6050043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 701 - 770
Target Start/End: Original strand, 26662301 - 26662370
Alignment:
Q  701 atgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcactatatattt 770  Q
    ||||| || |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26662301 atgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatatattt 26662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 821
Target Start/End: Original strand, 26665145 - 26665198
Alignment:
Q  768 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 821  Q
    ||||||||||||||||| || || |||||||||  |||| ||||||||||||||    
T  26665145 tttattagttgtgtaatcacttcgattatacttaaaatttatttactctattgg 26665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 114 - 347
Target Start/End: Original strand, 21481328 - 21481564
Alignment:
Q  114 atctccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481328 atctccaacaaaatacctcttctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaa 21481427  T
Q  214 actcatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccatt 310  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   | |||||| ||||||||||||||||||||||||||||    
T  21481428 acccatgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccatt 21481527  T
Q  311 actcaacatagatttggtgattgatatcaattctctg 347  Q
    |||||||||||||||||||||||||||||||||||||    
T  21481528 actcaacatagatttggtgattgatatcaattctctg 21481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 445 - 617
Target Start/End: Original strand, 21481663 - 21481839
Alignment:
Q  445 ccactgtttggcaattcttgtttttt-cctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taactttt 540  Q
    |||||||||||||||||||||||||| || ||||||||||||||||        | |||||||||||||||||||||||||||||||||   ||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  541 cccaaaatatgccaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 617  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataag 21481839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 217 - 347
Target Start/End: Original strand, 19701164 - 19701298
Alignment:
Q  217 catgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattac 312  Q
    |||||||||||| |||| |||||||||||||| | ||| ||||| ||||||||| ||||    ||||||||||||||||||||  |||||||||||||||    
T  19701164 catgatctttgtagtgttcatcaactgcttgctatttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattac 19701263  T
Q  313 tcaacatagatttggtgattgatatcaattctctg 347  Q
    |||||||||||||| ||||| |||||| |||||||    
T  19701264 tcaacatagatttgttgatttatatcatttctctg 19701298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 701 - 762
Target Start/End: Original strand, 19702539 - 19702600
Alignment:
Q  701 atgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcact 762  Q
    ||||| ||||||| ||||| ||||||| ||||||||||| |||||||||||||  |||||||    
T  19702539 atgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcact 19702600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 3e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 138 - 333
Target Start/End: Complemental strand, 13331727 - 13331531
Alignment:
Q  138 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatc 237  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   ||| |||||||||||||||| ||||    
T  13331727 cccttgccattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13331630  T
Q  238 aactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 333  Q
    ||||||||||  |||| |||||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13331629 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13331531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 138 - 333
Target Start/End: Complemental strand, 13342642 - 13342446
Alignment:
Q  138 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatc 237  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   ||| |||||||||||||||| ||||    
T  13342642 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 13342545  T
Q  238 aactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 333  Q
    ||||||||||  |||| |||||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13342544 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 13342446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 138 - 333
Target Start/End: Complemental strand, 5672198 - 5672002
Alignment:
Q  138 cccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatc 237  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||   ||| |||||||||||||||| ||||    
T  5672198 cccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagataacccatgatctttgtgtgttcatc 5672101  T
Q  238 aactgcttgccaattgggtttttgatttcactcttc---tgaaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 333  Q
    ||||||||||  |||| |||||||||||||||||||   | ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  5672100 aactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccattactcaacatagatttggtgattg 5672002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 8e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 138 - 347
Target Start/End: Complemental strand, 32718020 - 32717808
Alignment:
Q  138 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgt-gtgtgc 234  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||||||||| ||| |||||||| |||| |    
T  32718020 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttc 32717924  T
Q  235 atcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 331  Q
    |||||||||||||   ||| ||||| ||||||||||||||    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  32717923 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattactcaacatagatttggtgat 32717824  T
Q  332 tgatatcaattctctg 347  Q
    | |||||| |||||||    
T  32717823 ttatatcatttctctg 32717808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 138 - 347
Target Start/End: Original strand, 10637574 - 10637786
Alignment:
Q  138 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgt-gtgtgc 234  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||||||||| ||| |||||||| |||| |    
T  10637574 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaagaaacccattatctttgtagtgttc 10637670  T
Q  235 atcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 331  Q
    |||||||||||||   ||| ||||| ||||||||||||||    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10637671 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttccattactcaacatagatttggtgat 10637770  T
Q  332 tgatatcaattctctg 347  Q
    | |||||| |||||||    
T  10637771 ttatatcatttctctg 10637786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 821
Target Start/End: Original strand, 10641344 - 10641397
Alignment:
Q  768 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 821  Q
    |||||||||||| |||| || || |||||||||| |||| ||||||||||||||    
T  10641344 tttattagttgtataatcacttcgattatactttaaatttatttactctattgg 10641397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 768 - 821
Target Start/End: Complemental strand, 32714263 - 32714210
Alignment:
Q  768 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 821  Q
    |||||||||||| |||| || || |||||||||| |||| ||||||||||||||    
T  32714263 tttattagttgtataatcacttcgattatactttaaatttatttactctattgg 32714210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 138 - 347
Target Start/End: Original strand, 22893729 - 22893941
Alignment:
Q  138 cccttgccattcccgctattctttttctctg--attcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgt-gtgtgc 234  Q
    ||||||||||||||||||   ||||||||||  |||||||||||   |||||||||||||| |||| || |||| ||||| |||||||||||| |||| |    
T  22893729 cccttgccattcccgctaaa-tttttctctgctattcccgctaatt-ttttcacccatgatcttctata-aaaaggaaacccatgatctttgtagtgttc 22893825  T
Q  235 atcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgat 331  Q
    |||||||||||||   ||| ||||| ||||||||||||||    |||||| |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  22893826 atcaactgcttgctgtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttccattactcaacatagatttggtgat 22893925  T
Q  332 tgatatcaattctctg 347  Q
    | |||||| |||||||    
T  22893926 ttatatcatttctctg 22893941  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 701 - 770
Target Start/End: Original strand, 22902560 - 22902629
Alignment:
Q  701 atgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcactatatattt 770  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  22902560 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtattt 22902629  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 694 - 769
Target Start/End: Complemental strand, 46886142 - 46886067
Alignment:
Q  694 tccatagatgatgttcccaaatgtgacatattatttaagaaagtgagatttgtcaaatttggaatcactatatatt 769  Q
    |||||| ||||| ||||||| ||| | || |||| ||||||||||||||||||||||||| |||||||||||||||    
T  46886142 tccatatatgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatatt 46886067  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 339
Target Start/End: Original strand, 44306129 - 44306259
Alignment:
Q  212 aaactcatgatctttgtg-tgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttcc 307  Q
    |||| ||| ||||||||| ||| |||||||||||||| | || |||| | ||||||||||||||    ||||||||||| |||| | |   |||||||||    
T  44306129 aaacccatcatctttgtggtgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttcc 44306227  T
Q  308 attactcaacatagatttggtgattgatatca 339  Q
    ||||||||||||||||||||| ||||||||||    
T  44306228 attactcaacatagatttggtcattgatatca 44306259  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 821
Target Start/End: Complemental strand, 21532652 - 21532599
Alignment:
Q  768 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 821  Q
    ||||||||||||||||| || || |||||||||| |||| ||||||||||||||    
T  21532652 tttattagttgtgtaatcacttcgattatactttaaatttatttactctattgg 21532599  T

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Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 155 - 333
Target Start/End: Complemental strand, 15762154 - 15761973
Alignment:
Q  155 attctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaactcatgatctttgtgtgtgcatcaactgcttgccaattgg 254  Q
    |||||||||||||||||||| |||||||||||||| |||| | |||| ||||||||  | |  ||||||||||| ||| ||||||||  |||| |||| |    
T  15762154 attctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatcatatgatctttgtatgttcatcaactatttgctaatttg 15762055  T
Q  255 gtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagatttggtgattg 333  Q
    | ||||||||||||| ||||    || ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  15762054 ggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattactcaacatagatttggtgattg 15761973  T

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Target: scaffold0586 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 217 - 347
Target Start/End: Original strand, 9597 - 9731
Alignment:
Q  217 catgatctttgt-gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattac 312  Q
    |||||||||||| |||| |||||||||||||    ||| ||||| ||||||||||||||    ||||||||||||||||||||  |||||||||||||||    
T  9597 catgatctttgtagtgttcatcaactgcttgttgtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattac 9696  T
Q  313 tcaacatagatttggtgattgatatcaattctctg 347  Q
    |||||||||||||||||||| |||||| |||||||    
T  9697 tcaacatagatttggtgatttatatcatttctctg 9731  T

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Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 229 - 339
Target Start/End: Complemental strand, 13893810 - 13893697
Alignment:
Q  229 gtgtgcatcaactgcttgccaattgggtttttgatttcactcttctg---aaggtaccatctaatttcatcataattcttccattactcaacatagattt 325  Q
    |||| |||||||||||||  | || |||| | ||||||||||||||    ||||||||||| |||||| |   |||||||||||||||||||||||||||    
T  13893810 gtgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagattt 13893711  T
Q  326 ggtgattgatatca 339  Q
    ||||||||||||||    
T  13893710 ggtgattgatatca 13893697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 768 - 821
Target Start/End: Complemental strand, 3610 - 3557
Alignment:
Q  768 tttattagttgtgtaatgacatcaattatactttgaattcatttactctattgg 821  Q
    ||||||||||||||||| || || |||||||||| |||| ||||||||||||||    
T  3610 tttattagttgtgtaatcacttcgattatactttaaatttatttactctattgg 3557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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