View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_30 (Length: 465)
Name: NF0841_low_30
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 6 - 436
Target Start/End: Complemental strand, 46280303 - 46279873
Alignment:
| Q |
6 |
ctccaataatatgatgttgatttccaacttcatcatccacctgttgtcatgaataacaacagtactgatcatcatcagcggccttccaattcaacaatca |
105 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46280303 |
ctccaacaacatgatgttgatttccaacttcatcatccacctgttgtcatgaataacaacagtactgatcatcatcagcggccttccaattcaacaatca |
46280204 |
T |
|
| Q |
106 |
aagctaacaacaatcttcttcctgcagctgctggtaaaggcaaaactgtagtggatcagcagatccaaagaaaaagatctagcaagagagaccgacacag |
205 |
Q |
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| T |
46280203 |
aagctaacaacaatcttcttcctgcagctgctggtaaaggcaaaactgtagtggatcagcagatccaaagaaaaagatctagcaagagagaccgacacag |
46280104 |
T |
|
| Q |
206 |
caagatcaaaacggcgaaaggactaagagatcggagaatgagattgtcacttgaagttgcaaagaggttttttggtcttcaagatatgttaggctttgaa |
305 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46280103 |
caagatcaaaaccgcgaaaggactaagagatcggagaatgagattgtcacttgaagttgcaaagaggttttttggtcttcaagatatgttaggctttgaa |
46280004 |
T |
|
| Q |
306 |
aaagcaagcaaaacagtggactggttgctcaaccaatccaaacttgagatcaaactccttgcaagagagaaaaatgttaattttcctactaagagtgcat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46280003 |
aaagcaagcaaaacagtggactggttgctcaaccaatccaaacttgagatcaaactccttgcaagagagaaaaatgttaattttcctactaagagtgcat |
46279904 |
T |
|
| Q |
406 |
cttcaacttctgaatgtactgaaggagtttc |
436 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46279903 |
cttcaacttctgaatgtactgaaggagtttc |
46279873 |
T |
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