View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_32 (Length: 461)

Name: NF0841_low_32
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_32
NF0841_low_32
[»] chr7 (17 HSPs)
chr7 (145-449)||(4817700-4818004)
chr7 (186-449)||(4785271-4785534)
chr7 (22-137)||(19804794-19804909)
chr7 (57-135)||(40521203-40521281)
chr7 (57-137)||(7298632-7298712)
chr7 (55-134)||(28948991-28949069)
chr7 (405-461)||(4698614-4698670)
chr7 (145-233)||(4698845-4698933)
chr7 (405-461)||(4862525-4862581)
chr7 (56-136)||(16979604-16979683)
chr7 (63-134)||(40521016-40521086)
chr7 (68-134)||(7298835-7298900)
chr7 (62-131)||(46567960-46568028)
chr7 (68-134)||(19805612-19805678)
chr7 (57-103)||(46568145-46568191)
chr7 (55-128)||(47478367-47478436)
chr7 (153-238)||(4862270-4862355)
[»] chr2 (21 HSPs)
chr2 (22-134)||(16115196-16115308)
chr2 (22-135)||(42028730-42028843)
chr2 (22-134)||(31860079-31860191)
chr2 (22-134)||(7317635-7317747)
chr2 (57-136)||(42028576-42028655)
chr2 (23-134)||(2059490-2059593)
chr2 (57-134)||(15332849-15332926)
chr2 (55-133)||(3671822-3671899)
chr2 (57-135)||(16115045-16115123)
chr2 (57-135)||(31470586-31470663)
chr2 (57-134)||(13280022-13280099)
chr2 (57-134)||(31860272-31860349)
chr2 (22-135)||(13279839-13279945)
chr2 (55-134)||(31470763-31470841)
chr2 (68-134)||(7317833-7317899)
chr2 (68-134)||(36059285-36059351)
chr2 (57-134)||(2059671-2059748)
chr2 (57-134)||(38086154-38086231)
chr2 (68-134)||(38085967-38086032)
chr2 (77-134)||(15330449-15330505)
chr2 (57-134)||(3672010-3672087)
[»] scaffold0214 (2 HSPs)
scaffold0214 (22-137)||(11779-11894)
scaffold0214 (57-135)||(11625-11703)
[»] chr5 (30 HSPs)
chr5 (22-134)||(42630711-42630823)
chr5 (22-134)||(130254-130366)
chr5 (22-134)||(26534506-26534618)
chr5 (22-135)||(8323706-8323819)
chr5 (22-135)||(791746-791868)
chr5 (57-136)||(33377835-33377914)
chr5 (57-134)||(791592-791669)
chr5 (57-134)||(26534685-26534762)
chr5 (57-131)||(35454637-35454710)
chr5 (57-134)||(5146690-5146767)
chr5 (57-137)||(19898941-19899021)
chr5 (55-135)||(35454450-35454529)
chr5 (73-136)||(6518201-6518264)
chr5 (57-132)||(8323895-8323970)
chr5 (57-134)||(8489123-8489200)
chr5 (57-134)||(13823335-13823412)
chr5 (62-135)||(14388512-14388584)
chr5 (63-131)||(19897228-19897295)
chr5 (55-134)||(5146504-5146582)
chr5 (57-135)||(40881791-40881867)
chr5 (57-135)||(130435-130513)
chr5 (68-134)||(14069861-14069926)
chr5 (57-134)||(228717-228794)
chr5 (57-131)||(42630894-42630968)
chr5 (57-134)||(6518390-6518466)
chr5 (73-131)||(228987-229044)
chr5 (57-117)||(40882006-40882066)
chr5 (68-134)||(13823150-13823215)
chr5 (57-103)||(27319654-27319700)
chr5 (71-131)||(27319482-27319541)
[»] chr1 (26 HSPs)
chr1 (22-134)||(10227864-10227976)
chr1 (22-130)||(19059378-19059486)
chr1 (22-132)||(26551992-26552102)
chr1 (57-137)||(50892960-50893040)
chr1 (57-134)||(28217706-28217783)
chr1 (57-136)||(10227710-10227789)
chr1 (57-135)||(48871424-48871502)
chr1 (57-134)||(23346419-23346496)
chr1 (55-134)||(50893148-50893226)
chr1 (56-134)||(7062183-7062260)
chr1 (57-135)||(26552179-26552257)
chr1 (56-134)||(48871247-48871324)
chr1 (62-134)||(48752586-48752657)
chr1 (56-134)||(28217530-28217607)
chr1 (57-133)||(39669245-39669321)
chr1 (63-135)||(42180570-42180641)
chr1 (56-135)||(4156891-4156969)
chr1 (62-133)||(50905104-50905175)
chr1 (57-103)||(7062038-7062084)
chr1 (57-126)||(19059565-19059634)
chr1 (56-125)||(23346607-23346675)
chr1 (63-136)||(41834069-41834141)
chr1 (57-136)||(41833872-41833951)
chr1 (57-133)||(50904992-50905070)
chr1 (57-103)||(42180759-42180805)
chr1 (55-104)||(39669086-39669135)
[»] chr3 (13 HSPs)
chr3 (22-135)||(33219071-33219184)
chr3 (22-134)||(33214591-33214703)
chr3 (22-132)||(10598810-10598920)
chr3 (22-134)||(36274277-36274389)
chr3 (57-137)||(36635425-36635505)
chr3 (57-135)||(27073095-27073173)
chr3 (57-134)||(33214443-33214520)
chr3 (57-134)||(19580497-19580574)
chr3 (22-134)||(27072913-27073018)
chr3 (57-127)||(36274126-36274196)
chr3 (68-131)||(36635241-36635303)
chr3 (57-137)||(11650997-11651077)
chr3 (72-134)||(10599000-10599062)
[»] chr6 (8 HSPs)
chr6 (22-134)||(33022164-33022276)
chr6 (56-133)||(7789856-7789933)
chr6 (57-134)||(21389021-21389098)
chr6 (57-133)||(33022355-33022431)
chr6 (56-131)||(21389208-21389282)
chr6 (56-123)||(7789678-7789744)
chr6 (55-133)||(29859735-29859813)
chr6 (68-133)||(28472559-28472624)
[»] chr4 (14 HSPs)
chr4 (22-134)||(3102540-3102652)
chr4 (22-134)||(40533963-40534075)
chr4 (22-133)||(13690216-13690327)
chr4 (22-137)||(9231577-9231692)
chr4 (56-135)||(3102726-3102805)
chr4 (57-134)||(40534150-40534227)
chr4 (57-134)||(18381496-18381573)
chr4 (63-134)||(5121000-5121071)
chr4 (68-134)||(11147014-11147080)
chr4 (57-134)||(18936864-18936941)
chr4 (57-134)||(37177813-37177890)
chr4 (57-134)||(18936676-18936752)
chr4 (72-115)||(9231782-9231825)
chr4 (69-134)||(37177624-37177688)
[»] scaffold0135 (2 HSPs)
scaffold0135 (22-137)||(37443-37558)
scaffold0135 (72-115)||(37648-37691)
[»] chr8 (13 HSPs)
chr8 (22-137)||(37994705-37994820)
chr8 (22-134)||(44036814-44036926)
chr8 (56-136)||(2814430-2814510)
chr8 (57-137)||(14193512-14193591)
chr8 (57-134)||(397192-397269)
chr8 (57-134)||(37994895-37994972)
chr8 (57-134)||(41539770-41539847)
chr8 (68-134)||(41539969-41540034)
chr8 (57-134)||(14193324-14193400)
chr8 (68-134)||(2814243-2814308)
chr8 (68-137)||(397004-397072)
chr8 (68-118)||(25101746-25101796)
chr8 (56-137)||(40587976-40588057)
[»] scaffold0140 (1 HSPs)
scaffold0140 (68-134)||(15847-15913)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 145 - 449
Target Start/End: Complemental strand, 4818004 - 4817700
Alignment:
Q  145 attttgtaataaaatatacattcggaaattttagaaatagtggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagcatgaaaat 244  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4818004 attttgtaataaaatatacattcgaaaattttagaaatagtggcaaatatctatcgtgcttttggatttccaatctcagaaaacaccgtagcatgaaaat 4817905  T
Q  245 tttatgaaaacaaaggttgttcttcagtagtagttgaattggtggtatgagacccctagtcatcactactacttgtgaaacacgtatcactcccatcatc 344  Q
    |||  |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  4817904 tttcagaaaacaaaggttgttcttcagtagaggttgaattggtggtatgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatc 4817805  T
Q  345 agtaaaatgtgccaattctatcctttgcttactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaatgcaaac 444  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4817804 agtaaaatgtgacaattctatcctttgctcactcttttccttttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaac 4817705  T
Q  445 tctaa 449  Q
    |||||    
T  4817704 tctaa 4817700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 186 - 449
Target Start/End: Complemental strand, 4785534 - 4785271
Alignment:
Q  186 ggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagcatgaaaattttatgaaaacaaaggttgttcttcagtagtagttgaattg 285  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||    
T  4785534 ggcaaatatctatcgtgcttttggatttccattctcagaaaacaccgtagcatgaaaattttcagaaaacaaaggttgttcttcagtagaggttgaattg 4785435  T
Q  286 gtggtatgagacccctagtcatcactactacttgtgaaacacgtatcactcccatcatcagtaaaatgtgccaattctatcctttgcttactcttttcct 385  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  4785434 gtggtatgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatcagtaaaatgtgacaattctatcctttgctcactcttttcct 4785335  T
Q  386 tttccttggtaccaacaagcttactatcctcctcactcatctccaactgcaatgcaaactctaa 449  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4785334 tttccttggtaccaacaagcttactatcctcctcactcatctctaactgcaatgcaaactctaa 4785271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 19804909 - 19804794
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||||||||| |||| ||||||||||||||| || ||||| ||||| ||||||||||||||||| || ||||||| |||||||||||||    
T  19804909 catcaccattcaccaccaacatcattcatggtggaaaaacaacgatgtgtcgtgtttcaatttgttgtttgtaaggataataggttaggttcgttcctac 19804810  T
Q  122 acaaaaatttctcata 137  Q
    |||| |||||||||||    
T  19804809 acaagaatttctcata 19804794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 40521203 - 40521281
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  40521203 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 40521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 7298712 - 7298632
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  7298712 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctcata 7298632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 28948991 - 28949069
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  28948991 gaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 28949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 4698670 - 4698614
Alignment:
Q  405 cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaac 461  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4698670 cttagtatcctcctcacttatctccaactgcaatgcaaactctaaagctccaacaac 4698614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 4698933 - 4698845
Alignment:
Q  145 attttgtaataaaatatacattcggaaattttagaaatagtggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgt 233  Q
    ||||| |||||||||||||||| |||||||||||||  ||||  || ||||||||||||| |||||||  |||||||||||||||||||    
T  4698933 attttttaataaaatatacatttggaaattttagaatgagtgagaattatctatcgtgctcttggattcccaatctcagaaaacaccgt 4698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 4862525 - 4862581
Alignment:
Q  405 cttactatcctcctcactcatctccaactgcaatgcaaactctaaagctccaacaac 461  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4862525 cttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaac 4862581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 16979604 - 16979683
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||| ||||||||||    
T  16979604 aaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttagattcgttcctacacaagaatttctcat 16979683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 40521086 - 40521016
Alignment:
Q  63 atgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  40521086 atgacgtgtcatattttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 40521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 7298835 - 7298900
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  7298835 gtgttatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 7298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 46568028 - 46567960
Alignment:
Q  62 aatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||  |||||||||||||||| |||||    
T  46568028 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaagttcgttcctacacaagaattt 46567960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 19805612 - 19805678
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||||||||||||| ||| |||| ||||||||||  |||||||||||||||| ||||||||    
T  19805612 gtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaagaatttctc 19805678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 46568145 - 46568191
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgata 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  46568145 aaaacaatgatgtgtcatgttttaatttgttgtttgtaagaatgata 46568191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 47478436 - 47478367
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaa 128  Q
    |||||| ||||| |||||||||   |||||||||||||||||||||||| |||  ||||||| |||||||||||    
T  47478436 gaaaaaaaatgatgtgtcatgt---aatttgttgtttgtaagaatgata-gttaagttcgtttctacacaaaaa 47478367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 4862270 - 4862355
Alignment:
Q  153 ataaaatatacattcggaaattttagaaatagtggcaaatatctatcgtgcttttggattttcaatctcagaaaacaccgtagcat 238  Q
    |||||| |||||||   ||||||||| |  |||| ||| |||||||| |||| |||||||  | ||||||||||||||||||||||    
T  4862270 ataaaacatacatttcaaaattttaggatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcat 4862355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 16115196 - 16115308
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||    
T  16115196 catcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctac 16115295  T
Q  122 acaaaaatttctc 134  Q
    |||||||||||||    
T  16115296 acaaaaatttctc 16115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 42028730 - 42028843
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  42028730 catcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 42028829  T
Q  122 acaaaaatttctca 135  Q
    |||| |||||||||    
T  42028830 acaagaatttctca 42028843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 31860191 - 31860079
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  31860191 catcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctac 31860092  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  31860091 acaagaatttctc 31860079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 7317747 - 7317635
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||    
T  7317747 catcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctac 7317648  T
Q  122 acaaaaatttctc 134  Q
    |||||| ||||||    
T  7317647 acaaaagtttctc 7317635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 42028655 - 42028576
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  42028655 aaaacaacgacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaagaatttctcat 42028576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 2059593 - 2059490
Alignment:
Q  23 atcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctaca 122  Q
    ||||||||||||||||||||||        |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||     
T  2059593 atcatcattcaccaccaacacc--------tggaaaaacaatgaagtgtcatattttagtttgttgtttgtaaggatgataggttaggttcgttcctacc 2059502  T
Q  123 caaaaatttctc 134  Q
    ||| ||||||||    
T  2059501 caagaatttctc 2059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 15332849 - 15332926
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  15332849 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15332926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 3671899 - 3671822
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  3671899 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttct 3671822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 16115123 - 16115045
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    ||||||| || ||||||| ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||    
T  16115123 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaaaaatttctca 16115045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 31470663 - 31470586
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||    
T  31470663 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaagaatttctca 31470586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 13280022 - 13280099
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || || |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  13280022 aaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 13280099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 31860272 - 31860349
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||    
T  31860272 aaaacaacgatgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctc 31860349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 13279945 - 13279839
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||| |||||| ||| ||||||||||||||| ||       ||||||||||||||||||||||| ||||||| || |||||||||||||    
T  13279945 catcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttgtttgtaaggatgatagattaggttcgttcctac 13279853  T
Q  122 acaaaaatttctca 135  Q
    |||| |||||||||    
T  13279852 acaagaatttctca 13279839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 31470763 - 31470841
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||| ||||| |||||||  ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  31470763 gaaaaaaaatgatgtgtcattatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaaaaatttctc 31470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 7317833 - 7317899
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 7317899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 36059285 - 36059351
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||    
T  36059285 gtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttctc 36059351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 2059671 - 2059748
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||    
T  2059671 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaataatttctc 2059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 38086154 - 38086231
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| || |||| |||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||    
T  38086154 aaaacaatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaaaaatttctc 38086231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 38086032 - 38085967
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||    
T  38086032 gtgtcatgttttaatttgttgtttgtaagaatgata-gttagtttcgttcctacacaagaatttctc 38085967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 15330505 - 15330449
Alignment:
Q  77 tttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  15330505 tttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 15330449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 3672010 - 3672087
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| |||| || |||||||||||| ||||||| |||||||  || | ||||||||| || || ||||||||    
T  3672010 aaaacaatgacgtgttatattttaatttgttatttgtaaaaatgatatattagattcgttcctccataagaatttctc 3672087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 11779 - 11894
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  11779 catcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 11878  T
Q  122 acaaaaatttctcata 137  Q
    |||| |||||||||||    
T  11879 acaagaatttctcata 11894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 11703 - 11625
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||    
T  11703 aaaacaatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaattactca 11625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 42630823 - 42630711
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |||    
T  42630823 catcaccattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatac 42630724  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  42630723 acaagaatttctc 42630711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 130366 - 130254
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  ||| ||||| |||||||||||||    
T  130366 catcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctac 130267  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  130266 acaagaatttctc 130254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 26534618 - 26534506
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  26534618 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctac 26534519  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  26534518 acaagaatttctc 26534506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 8323819 - 8323706
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||  |||||||||| |||||||||||||    
T  8323819 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctac 8323720  T
Q  122 acaaaaatttctca 135  Q
    |||| |||||||||    
T  8323719 acaagaatttctca 8323706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 791746 - 791868
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgt---------tttaatttgttgtttgtaagaatgataggttgggtt 112  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||         |||||||||||||||||||  |||||||||| ||||    
T  791746 catcaccattcaccaccaacaccatttatggtggaaaaataatgacgtgtcatgttttaatttgtttaatttgttgtttgtaaagatgataggttaggtt 791845  T
Q  113 cgttcctacacaaaaatttctca 135  Q
    ||||||||||||| |||||||||    
T  791846 cgttcctacacaagaatttctca 791868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 33377835 - 33377914
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||||    
T  33377835 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacataagaatttctcat 33377914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 791669 - 791592
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||    
T  791669 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaaaaatttctc 791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 26534685 - 26534762
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  26534685 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 26534762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 35454637 - 35454710
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  35454637 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 35454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 5146690 - 5146767
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||  || |||||||| |||||||| ||||||||    
T  5146690 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaagaatttctc 5146767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 19898941 - 19899021
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    ||||||||||  ||||||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  19898941 aaaacaatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaagaatttctcata 19899021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 35454529 - 35454450
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||    
T  35454529 gaaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctca 35454450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 6518264 - 6518201
Alignment:
Q  73 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcat 6518201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 8323895 - 8323970
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttc 132  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||    
T  8323895 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttc 8323970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 8489200 - 8489123
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||| ||| | || |||||||||||| ||||||||    
T  8489200 aaaacaatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaagaatttctc 8489123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 13823335 - 13823412
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||| |||  |||||||||||||||| ||||||||    
T  13823335 aaaacaatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaagaatttctc 13823412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 14388512 - 14388584
Alignment:
Q  62 aatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||    
T  14388512 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggtttgttcctacacaagaatttctca 14388584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 19897295 - 19897228
Alignment:
Q  63 atgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  19897295 atgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaataattt 19897228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 5146582 - 5146504
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||| ||| | ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  5146582 gaaaaaaaataacgtgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaataatttctc 5146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 40881867 - 40881791
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||  ||| ||||||||||||||||| |||||||||    
T  40881867 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaataat--gttaggttcgttcctacacaacaatttctca 40881791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 130435 - 130513
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    ||||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||| ||||| || |||||||||    
T  130435 aaaacaacgacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactacaaaagaatttctca 130513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 14069926 - 14069861
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||    
T  14069926 gtgtcatgttttaatttgttgtttataagaatgata-gttaggttcgttcctacacaagaatttctc 14069861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 228794 - 228717
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||| | ||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||  ||||||||    
T  228794 aaaacaataacgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacacagtaatttctc 228717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 42630894 - 42630968
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    ||||||| || ||||||| ||||||||| ||||||||||| |||||||||| ||||||| ||||||||| |||||    
T  42630894 aaaacaacgacgtgtcatattttaatttattgtttgtaaggatgataggttaggttcgtgcctacacaagaattt 42630968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 6518390 - 6518466
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||| ||||| || |||| |||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||    
T  6518390 aaaaaaatgatgtatcatattttaatttgttgtttgtaagaatgata-gttaggttcgttactacacaagaatttctc 6518466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 228987 - 229044
Alignment:
Q  73 atgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||    
T  228987 atgttttaatttgttgtttgtaagaatgata-gttatgttcgtttctacacaaaaattt 229044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 40882006 - 40882066
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttc 117  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||| ||| | |||||||    
T  40882006 aaaacaataacgtgtcatattttaatttgttgtttgtaagaatgatatgttagattcgttc 40882066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 13823215 - 13823150
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||||||||| ||| |||||| || ||||||||| || ||||||||||||||||| ||||||||    
T  13823215 gtgtcatgttttagtttattgtttatacgaatgatag-ttaggttcgttcctacacaagaatttctc 13823150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 27319654 - 27319700
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgata 103  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||    
T  27319654 aaaacaatgatgtttcatattttaatttgttgtttgtaagaatgata 27319700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 27319541 - 27319482
Alignment:
Q  71 tcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    |||||||||||||| || ||||||||||||||| |||  |||| || ||||||||||||||    
T  27319541 tcatgttttaatttattatttgtaagaatgata-gttaagttcattactacacaaaaattt 27319482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 10227864 - 10227976
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  10227864 catcaccattcaccaccaacaccatttatggtggaaaaataatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 10227963  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  10227964 acaagaatttctc 10227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 19059486 - 19059378
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||| ||||||| || |||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  19059486 catcaccattcaccaccaccaccattcatagtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 19059387  T
Q  122 acaaaaatt 130  Q
    |||| ||||    
T  19059386 acaagaatt 19059378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 26552102 - 26551992
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||| ||| ||||||||| ||||||||||| |||||||||| | |||||||||||    
T  26552102 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgccatattttaattttttgtttgtaaggatgataggttagattcgttcctac 26552003  T
Q  122 acaaaaatttc 132  Q
    |||| ||||||    
T  26552002 acaagaatttc 26551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 50893040 - 50892960
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  50893040 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaaaaatttctcata 50892960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 28217706 - 28217783
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  28217706 aaaacaatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaataatttctc 28217783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 10227789 - 10227710
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    ||||||| || ||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||    
T  10227789 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaagaatttctcat 10227710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 48871424 - 48871502
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  48871424 aaaacaatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctca 48871502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 23346496 - 23346419
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  23346496 aaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 23346419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 50893148 - 50893226
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||| ||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||    
T  50893148 gaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaataatgata-gttaggttcgttcctacacaagaatttctc 50893226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 7062183 - 7062260
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||| ||||| ||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  7062183 aaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgata-gttaggttcgttcctacacaaaaatttctc 7062260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 26552179 - 26552257
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    ||||||| || ||||||| ||||||||||||||||||||| |||||||||| |||||| |||||||||| |||||||||    
T  26552179 aaaacaacgacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaagaatttctca 26552257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 48871324 - 48871247
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  48871324 aaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 48871247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 48752586 - 48752657
Alignment:
Q  62 aatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||    
T  48752586 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcatacacaagaatttctc 48752657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 28217607 - 28217530
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||  ||||||||    
T  28217607 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-attaggttcgttcctacacaggaatttctc 28217530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 39669245 - 39669321
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    |||||||| | |||||||||||||||||||| ||||||||||||||| |||  ||||||| |||||||| |||||||    
T  39669245 aaaacaataacgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaagaatttct 39669321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 42180641 - 42180570
Alignment:
Q  63 atgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||| |||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||| |||||||||    
T  42180641 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttaggttcgttcctacacaagaatttctca 42180570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 4156969 - 4156891
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    ||||| ||||| ||||||||||||||||| || ||||||||||||||| ||| ||||| ||||||||||| |||||||||    
T  4156969 aaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgata-gttaggttccttcctacacaagaatttctca 4156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 50905104 - 50905175
Alignment:
Q  62 aatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    ||||| || ||||||||||||||||||||||||||||||||| ||| | ||||||  |||||||||||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaaaaatttct 50905175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 7062084 - 7062038
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgata 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7062084 aaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 19059565 - 19059634
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaa 126  Q
    ||||||| || ||||||| |||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  19059565 aaaacaacgatgtgtcatattttaatttgttctttataaggatgataggttaggttcgttcctacacaaa 19059634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 23346607 - 23346675
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaa 125  Q
    ||||| |||||  |||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||    
T  23346607 aaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctacacaa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 41834069 - 41834141
Alignment:
Q  63 atgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    |||| |||||||||||||||||||||||||||| |||| || |||  |||||||||||||||| ||||||||||    
T  41834069 atgacgtgtcatgttttaatttgttgtttgtaataatgcta-gttatgttcgttcctacacaagaatttctcat 41834141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 41833951 - 41833872
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||  || | |||||| ||| |||| ||||||||||    
T  41833951 aaaataatgacgtgtcatgttttaatttgttgtgtgtaagaatgatatattagattcgtttctatacaagaatttctcat 41833872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 50905070 - 50904992
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggt--tgggttcgttcctacacaaaaatttct 133  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||||  |  | ||||||||||||||||| |||||||    
T  50905070 aaaacaatgacgtgtcatgttttaacttgttgtttgtaaaaatgatatatattaggttcgttcctacacaagaatttct 50904992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 42180759 - 42180805
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgata 103  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  42180759 aaaataatgatgtgtcatgttttagtttgttgtttgtaagaatgata 42180805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 39669135 - 39669086
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgatag 104  Q
    |||||| ||||| || |||| ||||||||| |||||||||||||||||||    
T  39669135 gaaaaaaaatgacgtatcatattttaatttattgtttgtaagaatgatag 39669086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 33219184 - 33219071
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  33219184 catcaccattcaccaccaacaccatttatggtggaaaaacaatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 33219085  T
Q  122 acaaaaatttctca 135  Q
    |||| |||||||||    
T  33219084 acaagaatttctca 33219071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 33214591 - 33214703
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  33214591 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctac 33214690  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  33214691 acaagaatttctc 33214703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 10598920 - 10598810
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  10598920 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctac 10598821  T
Q  122 acaaaaatttc 132  Q
    |||| ||||||    
T  10598820 acaagaatttc 10598810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 36274277 - 36274389
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||| | |||||||||||    
T  36274277 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaagatgataggttagattcgttcctac 36274376  T
Q  122 acaaaaatttctc 134  Q
    | || ||||||||    
T  36274377 ataagaatttctc 36274389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 36635425 - 36635505
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||||    
T  36635425 aaaacaatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaagaatttctcata 36635505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 27073095 - 27073173
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  27073095 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 27073173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 33214520 - 33214443
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  33214520 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 33214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 19580497 - 19580574
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  19580497 aaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaagaatttctc 19580574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 27073018 - 27072913
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| ||||||||| |||||| ||| ||||||||||||||| ||       ||||||||||||||||||||||| ||||||| || |||||||||||||    
T  27073018 catcaccattcaccagcaacactattcatggtggaaaaacaacga-------tgttttaatttgttgtttgtaaggatgatagattaggttcgttcctac 27072926  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  27072925 acaagaatttctc 27072913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 36274196 - 36274126
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaa 127  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  36274196 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaaaa 36274126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 36635303 - 36635241
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||    
T  36635303 gtgtcatgttttaatttgttgtttgtaacaatgata-gttaggttcgttcctacacaagaattt 36635241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 11651077 - 11650997
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    ||||||||||  | |||| |||||| ||||||||||||||||||||| ||| ||||||||| || |||| |||||||||||    
T  11651077 aaaacaatgatatatcatattttaaattgttgtttgtaagaatgatatgttaggttcgttcataaacaagaatttctcata 11650997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 10599000 - 10599062
Alignment:
Q  72 catgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||||||||||||||||||||| |||||| ||| |||||||| | |||||| ||||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaagaatttctc 10599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 33022276 - 33022164
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  33022276 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 33022177  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  33022176 acaataatttctc 33022164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 7789856 - 7789933
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||    
T  7789856 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaagaatttct 7789933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 21389098 - 21389021
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| ||| |||||||||||||| || ||||||||    
T  21389098 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacagaagaatttctc 21389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 33022355 - 33022431
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||    
T  33022355 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaagaatttct 33022431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 21389208 - 21389282
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaattt 131  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  21389208 aaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaattt 21389282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 7789744 - 7789678
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacac 123  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  7789744 aaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 29859735 - 29859813
Alignment:
Q  55 gaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    |||||| ||| | |||| ||| ||||||||||||||| ||| |||||||  || |||||||||||||| ||||||||||    
T  29859735 gaaaaaaaataacgtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 29859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 28472559 - 28472624
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttct 133  Q
    |||| ||| ||||||||||||||| ||| |||||||  || |||||||||||||| ||||||||||    
T  28472559 gtgttatgatttaatttgttgtttataaaaatgatatattaggttcgttcctacataaaaatttct 28472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 3102652 - 3102540
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  3102652 catcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 3102553  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  3102552 acaagaatttctc 3102540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 40534075 - 40533963
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40534075 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctac 40533976  T
Q  122 acaaaaatttctc 134  Q
    |||| ||||||||    
T  40533975 acaagaatttctc 40533963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 13690327 - 13690216
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  13690327 catcaccattcaccaccaacaccatttatggtggaaaaacaacgacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctac 13690228  T
Q  122 acaaaaatttct 133  Q
    |||| |||||||    
T  13690227 acaagaatttct 13690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 9231692 - 9231577
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  9231692 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctac 9231593  T
Q  122 acaaaaatttctcata 137  Q
    |||| |||||||||||    
T  9231592 acaagaatttctcata 9231577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 3102726 - 3102805
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctca 135  Q
    |||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||    
T  3102726 aaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctca 3102805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 40534150 - 40534227
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  40534150 aaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 40534227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 18381496 - 18381573
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||| ||||||||    
T  18381496 aaaacaatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaagaatttctc 18381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 5121000 - 5121071
Alignment:
Q  63 atgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaagaatttctc 5121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 11147080 - 11147014
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||    
T  11147080 gtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaagaatttctc 11147014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 18936864 - 18936941
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||  || |||||||||||| |||| ||||||||    
T  18936864 aaaacaatgacgtgtcatgttttaatttattgtttgtaagaatgatatattaggttcgttcctagacaagaatttctc 18936941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 37177813 - 37177890
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| || ||||||||||||||||||||||||||||||||| |||  ||||||||||| |||| ||||||||    
T  37177813 aaaacaatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttatgttcgttcctagacaagaatttctc 37177890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 18936752 - 18936676
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||| |||  |||||||| ||||||| ||||||||    
T  18936752 aaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgata-gttatgttcgttcatacacaagaatttctc 18936676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 9231782 - 9231825
Alignment:
Q  72 catgttttaatttgttgtttgtaagaatgataggttgggttcgt 115  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  9231782 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 9231825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 37177688 - 37177624
Alignment:
Q  69 tgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||| ||||||||| ||||||||||||||||||  |||  |||||||||||| || ||||||||    
T  37177688 tgtcatattttaatttattgtttgtaagaatgata-attgaattcgttcctacagaagaatttctc 37177624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 37558 - 37443
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  37558 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctac 37459  T
Q  122 acaaaaatttctcata 137  Q
    |||| |||||||||||    
T  37458 acaagaatttctcata 37443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 37648 - 37691
Alignment:
Q  72 catgttttaatttgttgtttgtaagaatgataggttgggttcgt 115  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  37648 catgttttaatttgttgtttgtaaggatgataggttaggttcgt 37691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 37994820 - 37994705
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| |||||||||||||||||||| ||||||||||||||| || || |||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  37994820 catcaccattcaccaccaacaccattcatggtggaaaaacaacgacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctac 37994721  T
Q  122 acaaaaatttctcata 137  Q
    |||| |||||||||||    
T  37994720 acaagaatttctcata 37994705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 44036926 - 44036814
Alignment:
Q  22 catcatcattcaccaccaacaccatttatggtggaaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctac 121  Q
    ||||| || ||||||||||||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||| ||||||| |||||    
T  44036926 catcaccactcaccaccaacaccattcatggtggaaaaacaacgacgtgtcatgtttgaatttgttgtttgtaaggatgataggttaggttcgtccctac 44036827  T
Q  122 acaaaaatttctc 134  Q
    |||  ||||||||    
T  44036826 acatgaatttctc 44036814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 2814430 - 2814510
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcat 136  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  2814430 aaaaacaatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctcat 2814510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 14193512 - 14193591
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  14193512 aaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctcata 14193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 397192 - 397269
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||| ||||||||    
T  397192 aaaacaatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaagaatttctc 397269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Original strand, 37994895 - 37994972
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| ||||||||    
T  37994895 aaaacaacgacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaagaatttctc 37994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 41539847 - 41539770
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  41539847 aaaacaacgacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 41539770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 41539969 - 41540034
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  41539969 gtgtcatgttttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 41540034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 14193400 - 14193324
Alignment:
Q  57 aaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |||||||||||| |||||||||||||    
T  14193400 aaaacaatgatgtgtcatgttttaatttgttgtttgtaaaaataatatgttaggttcgttccta-acaaaaatttctc 14193324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 2814308 - 2814243
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  2814308 gtgtcatgatttaatttgttgtttgtaagaatgata-gttaggttcgttcctacacaagaatttctc 2814243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 397072 - 397004
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    |||| |||||||||||| |||||||||||||||||| ||| ||||||||||| ||||| |||||||||||    
T  397072 gtgttatgttttaatttattgtttgtaagaatgata-gttaggttcgttcctgcacaagaatttctcata 397004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 25101796 - 25101746
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcc 118  Q
    ||||||| ||||| ||||||||||| |||||||||||||| ||||||||||    
T  25101796 gtgtcatattttattttgttgtttgcaagaatgataggttaggttcgttcc 25101746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 40587976 - 40588057
Alignment:
Q  56 aaaaacaatgaagtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctcata 137  Q
    ||||| |||||| | ||||||||||||||||| ||| ||| |||||||  ||   ||||||||||||| | |||||||||||    
T  40587976 aaaaaaaatgaaatatcatgttttaatttgttatttataaaaatgatatattaaattcgttcctacaccagaatttctcata 40588057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 15913 - 15847
Alignment:
Q  68 gtgtcatgttttaatttgttgtttgtaagaatgataggttgggttcgttcctacacaaaaatttctc 134  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  15913 gtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaagaatttctc 15847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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