View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_36 (Length: 434)
Name: NF0841_low_36
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 425
Target Start/End: Original strand, 43856682 - 43857088
Alignment:
| Q |
30 |
ctggctagctttcatggagatctatgtcatgatatattctctttaattatc------ttgtttttgtttactttcttgaactcccttcattcttcaatct |
123 |
Q |
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| T |
43856682 |
ctggctagctttcatggagatctatgtcatgatatattctctttaattatcattatcttgtttttgtttactttcttgaactcccttcattcttcaatct |
43856781 |
T |
|
| Q |
124 |
cgtgctttgcatgcaacttgattaa-------tattgagaggaaaaaaggccctttcgtccaattttacattgaatattgtgaatgtagttannnnnnnn |
216 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856782 |
cgtgctttgcatgcaacttgattaaagacatttattgagaggaaaaaaggtcctttcgtccaattttacattgaatattgtgaatgtagttattattatt |
43856881 |
T |
|
| Q |
217 |
nnnnnnnnnnnnaatgtttcacaccttgttatagttgacaaaatggccaattgagagcttgtttaagagagagattgatatatagatcagagatcgatct |
316 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856882 |
attatttttt--aatgtttcacacctcgttatagttgacaaaatggccaattgagagcttgtttaagagagagattgatatatagatcagagatcgatct |
43856979 |
T |
|
| Q |
317 |
atcannnnnnnnnnnnnnnnnnnnnnnnaacgttatgtagtcatagatggaaagtcttttttccatctatcaatagaaatgaagacaatctcagctctaa |
416 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43856980 |
atcaatttatttttatttaattattttaaacgttatgtagtcatagatggaaagtcttttttccatctatcaatagaaatgaagacaatctcagctctaa |
43857079 |
T |
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| Q |
417 |
tagaattat |
425 |
Q |
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|| |||||| |
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| T |
43857080 |
taaaattat |
43857088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 17751627 - 17751691
Alignment:
| Q |
59 |
tgatatattctctttaattatcttgtttttgtttactttcttgaactcccttcattcttcaatct |
123 |
Q |
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||||||||| || | |||| ||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
17751627 |
tgatatattttcatcaattctcttgtttttgtttaatttcttgaactatgttcattcttcaatct |
17751691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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