View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_39 (Length: 424)

Name: NF0841_low_39
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_39
NF0841_low_39
[»] chr8 (2 HSPs)
chr8 (332-404)||(12933811-12933883)
chr8 (355-392)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (332-404)||(14177081-14177153)
chr4 (332-402)||(28608724-28608794)
chr4 (340-393)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (325-362)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (325-362)||(796698-796735)
chr6 (325-362)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (325-362)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 12933811 - 12933883
Alignment:
Q  332 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 404  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 12933883  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  355 catggagatttggaagaggagatttatatggagcaacc 392  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 14177081 - 14177153
Alignment:
Q  332 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttga 404  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||||    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttga 14177153  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 402
Target Start/End: Complemental strand, 28608794 - 28608724
Alignment:
Q  332 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggattt 402  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt 28608724  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  340 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 393  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  325 gagcagttggatgtgaaaactgcatttcttcatggaga 362  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  325 gagcagttggatgtgaaaactgcatttcttcatggaga 362  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  325 gagcagttggatgtgaaaactgcatttcttcatggaga 362  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  325 gagcagttggatgtgaaaactgcatttcttcatggaga 362  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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