View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_40 (Length: 424)
Name: NF0841_low_40
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_40 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 29 - 424
Target Start/End: Complemental strand, 35341700 - 35341299
Alignment:
| Q |
29 |
aattaaatcatttatattattggttagagaggcttccattaagataagattctgaaattgcaaatataaccggttatggttgcctagccaatagagactg |
128 |
Q |
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| T |
35341700 |
aattaaatcatttatattattggttagagaggcttccattaagataagattctgaaattgcaaatataaccggttatggttgcctagccaatagagactg |
35341601 |
T |
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| Q |
129 |
ttttttcctctatatgatgaacttaccattcatagaaagtgggatctttgaatgcttcatttgtccaccaaccatcaatatgcta--------tgtatcc |
220 |
Q |
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| T |
35341600 |
tttcttcctctatatgatgaacttaccattcatagaaagtgggatctttgaatgcttcatttgtccaccaaccatcaatatgctaatatgctatgtatcc |
35341501 |
T |
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| Q |
221 |
atttttaactattatcttttgactagttggcaattaaattccacagttctatgcaccttcccattattatgggaagtgtcattcctcttctcaatattcc |
320 |
Q |
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| T |
35341500 |
atttttaactattatcttttgactagttggcaattaaattccacagttctatgcaccttcccattattatgggaagtgtcattcctcttctcaatattcc |
35341401 |
T |
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| Q |
321 |
ttaaaaatttgcatgttttaatgaatcttctagtgcttcaattctattttcttccaagaggagaaatnnnnnnnnncagtaagcacttcacctccaatag |
420 |
Q |
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| T |
35341400 |
ttaaaaatttgcatgttttaatgaatcttctagtgcttcaattctattttcttccaagaggagaaataaaaaaaa--agtaagcacttcacctccaatag |
35341303 |
T |
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| Q |
421 |
aacc |
424 |
Q |
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|||| |
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| T |
35341302 |
aacc |
35341299 |
T |
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