View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_41 (Length: 418)
Name: NF0841_low_41
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 68 - 408
Target Start/End: Original strand, 6466265 - 6466605
Alignment:
| Q |
68 |
tgttagcttatactgatagacatatatatgatacataactgacgttgaatttcaaactgctcatttggacatcagttagcgacccttattttatattaaa |
167 |
Q |
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| T |
6466265 |
tgttagcttatactgttagacatatatatgatacataactgacgttgaatttcaaactgctcatttggacatcagttagcgacccttattttatattaaa |
6466364 |
T |
|
| Q |
168 |
aacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaacaattattcttactatttttattttcaggaaacaa |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6466365 |
aacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaacaattattcttactatttttattttcaggaaacaa |
6466464 |
T |
|
| Q |
268 |
tgaagatggacgtatgatgttaaatcaaaccttcacgattggtaannnnnnnncaatacaatatagattgttatgaactaatgcttatgattattgtttg |
367 |
Q |
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| T |
6466465 |
tgaagatggacgtatgatgttaaatcaaaccttcacgattggtaattttttttcaatacaatatagattgttatgaactaatgcttatgattattgtttg |
6466564 |
T |
|
| Q |
368 |
cgaagctggaatctttgcatttgttttgctcttgttctctg |
408 |
Q |
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| T |
6466565 |
cgaagctggaatctttgcatttgttttgctcttgttctctg |
6466605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 2431358 - 2431279
Alignment:
| Q |
6 |
aactacatttattctttgataaaaaataaattctcaatacattcctttatcaaaatcaactgtgttagcttatactgata |
85 |
Q |
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| T |
2431358 |
aactacatttattctatgataaaaaataaattctcaatacattcctttatcaaaatcaactgtgttagcttatactgata |
2431279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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