View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_44 (Length: 408)
Name: NF0841_low_44
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_44 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 4818274 - 4818660
Alignment:
| Q |
22 |
tctaaatgttttagaaaatccgaacatgctaatactgcccctttgagaaagtggggaaaagcatagtcttcctgtatgtggtcatgaattgtggactcac |
121 |
Q |
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| T |
4818274 |
tctaaatgttttagaaaatccgaacatgctaatactgcccgtttgagaaagtggggaaaagcatagtcttcctgtatgtggtcatgaattgtggactcac |
4818373 |
T |
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| Q |
122 |
atattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaa |
221 |
Q |
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| T |
4818374 |
agattagtaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaa |
4818473 |
T |
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| Q |
222 |
gaccccaaatcttcaagatatcttgcaaa-atagagactaatttgatgatttactcatttattaaggcattcaaaaataaggatttcttcatcaacaatc |
320 |
Q |
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||| || |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4818474 |
gactcc-aatcatcaagatatcttacaaagatagagactaatttgatgatttactcatttattaaggcatttaaaaataaggatttcttcatcaacaatc |
4818572 |
T |
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| Q |
321 |
atctacatcatctctactagcgaaaaggcgggcactcgcgttacttatctttagtatattatgtttgttacacttttatttgaatatt |
408 |
Q |
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| T |
4818573 |
atctacatcatctctactagcgaaaaggcgggcactcgcgttacttatctttagtatattatgtttgttacacttttatttgaatatt |
4818660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 4715263 - 4715399
Alignment:
| Q |
87 |
gtcttcctgtatgtggtcatgaattgtggactcacatattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgacta |
186 |
Q |
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| T |
4715263 |
gtcttcctgtat-tggtcatgaattgtggactcacagattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgacta |
4715361 |
T |
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| Q |
187 |
tgctctaattatcttagatgccaaaatgttccaaagac |
224 |
Q |
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| T |
4715362 |
tgctttaattatcttagatgccaaaatgttcctaagac |
4715399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 4790010 - 4790091
Alignment:
| Q |
143 |
tctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagac |
224 |
Q |
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| T |
4790010 |
tctattttagaaacaaagacgttttcgagctttctgcgtgactatgctttaattatcttagatgccaaaatgttccaaagac |
4790091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 4785608 - 4785660
Alignment:
| Q |
356 |
tcgcgttacttatctttagtatattatgtttgttacacttttatttgaatatt |
408 |
Q |
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| T |
4785608 |
tcgcattacttatctttagtatattatgtttgttacacttttatttgaatatt |
4785660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 4789979 - 4790012
Alignment:
| Q |
57 |
tgcccctttgagaaagtggggaaaagcatagtct |
90 |
Q |
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| T |
4789979 |
tgcccctttgagaaagtggggaaaagcatagtct |
4790012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 4700970 - 4701034
Alignment:
| Q |
158 |
aagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagac |
224 |
Q |
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| T |
4700970 |
aagacgttttggagctttctctgtgactat--tttaaatatcttagatggcaaaatattccaaagac |
4701034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 4789934 - 4789966
Alignment:
| Q |
23 |
ctaaatgttttagaaaatccgaacatgctaata |
55 |
Q |
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| T |
4789934 |
ctaaatgttttagaaaatccaaacatgctaata |
4789966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 336
Target Start/End: Complemental strand, 18953503 - 18953443
Alignment:
| Q |
276 |
catttattaaggcattcaaaaataaggatttcttcatcaacaatcatctacatcatctcta |
336 |
Q |
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| T |
18953503 |
cattcatttaggcattcaaagacaagggtttcttcatcaacgatcatctacgtcatctcta |
18953443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 12139827 - 12139790
Alignment:
| Q |
299 |
aaggatttcttcatcaacaatcatctacatcatctcta |
336 |
Q |
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| T |
12139827 |
aaggatttcttcatcaacgatcatctacttcatctcta |
12139790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 17187856 - 17187813
Alignment:
| Q |
287 |
gcattcaaaaataaggatttcttcatcaacaatcatctacatca |
330 |
Q |
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| T |
17187856 |
gcatttaaagataaggatttcttcatcaacagtcatctacatca |
17187813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 28559299 - 28559352
Alignment:
| Q |
276 |
catttattaaggcattcaaaaataaggatttcttcatcaacaatcatctacatc |
329 |
Q |
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| T |
28559299 |
cattcattcaggcattcaaagagaaggatttcttcgtcaacagtcatctacatc |
28559352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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