View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_46 (Length: 388)
Name: NF0841_low_46
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 57 - 378
Target Start/End: Original strand, 37533301 - 37533623
Alignment:
| Q |
57 |
taaggaataggataaggctaatttcttggggaaacctacccgccatatataacaatatcggtgtctgcaacaacagcggtatgagaaaaccgcccttgtg |
156 |
Q |
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| T |
37533301 |
taaggaataggataaggctaatttcttggggaaacctacccgccatatataacaatatcggtgtctgcaacaacagcggtatgagaaaaccgtccttgtg |
37533400 |
T |
|
| Q |
157 |
gctgttgaccatgtatatcaagttgagaccataaacaagtgtgtatgtcaaacacccaaatgtcgttgcaataacgtttatctccgacccctccaatgat |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37533401 |
gctgttgaccatgtatatcaagttgagaccataaacaagtgtgtatgtcaaacacccaaatgtcgttgcaataacgtttatctccgacccctccaatgat |
37533500 |
T |
|
| Q |
257 |
gtatacctgagattaatcatcacaagagtaagtggtaagtgt-aaaaaagtaccataaatagcgtaaataaataatgactctaattgttcgtgaaaaaag |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
37533501 |
gtatacctgagattaatcatcacaagagtaagtggtaagtgtaaaaaaagtaccataaatagcataagtaaataatgactctaattgttcgtgaaaaaag |
37533600 |
T |
|
| Q |
356 |
gttatcatcctctcatgcctttg |
378 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
37533601 |
gttatcatcctctcatgcctttg |
37533623 |
T |
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