View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_47 (Length: 386)

Name: NF0841_low_47
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_47
NF0841_low_47
[»] chr6 (1 HSPs)
chr6 (123-298)||(10759080-10759254)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 123 - 298
Target Start/End: Original strand, 10759080 - 10759254
Alignment:
Q  123 tgaaattgacaccaaagaaaagcaaaccagagactttaaaaggaacacaccaaagtctcaaacaaacatcaccatttattttgattattaagtcatattc 222  Q
    |||||||||||||||||||||||||    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10759080 tgaaattgacaccaaagaaaagcaa----gagactttgaaaggaacacaccaaaatctcaaacaaacatcaccatttattttgattattaagtcatattc 10759175  T
Q  223 tcagtcatatggtgttttaataataacaaac---ctaataatgatcaagacttctgatcatttatccattgatgatgtc 298  Q
    |||||||||||| ||||||||||||||||||   |||| |||||| |||||||||||||||||||||||||||||||||    
T  10759176 tcagtcatatggcgttttaataataacaaaccttctaacaatgattaagacttctgatcatttatccattgatgatgtc 10759254  T

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