View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_48 (Length: 370)

Name: NF0841_low_48
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_48
NF0841_low_48
[»] chr2 (24 HSPs)
chr2 (29-359)||(39371946-39372276)
chr2 (290-358)||(39379530-39379598)
chr2 (101-222)||(39179550-39179673)
chr2 (251-358)||(39386325-39386432)
chr2 (109-223)||(39386436-39386551)
chr2 (101-222)||(39224558-39224679)
chr2 (288-358)||(39217461-39217531)
chr2 (286-358)||(39179713-39179785)
chr2 (286-358)||(39396222-39396294)
chr2 (259-351)||(39224691-39224783)
chr2 (296-340)||(39419841-39419885)
chr2 (107-183)||(39188479-39188557)
chr2 (107-181)||(39419997-39420071)
chr2 (288-361)||(2363546-2363619)
chr2 (296-344)||(39471488-39471537)
chr2 (107-175)||(39452109-39452177)
chr2 (288-340)||(44748567-44748619)
chr2 (101-183)||(39139828-39139908)
chr2 (288-323)||(44625143-44625178)
chr2 (276-358)||(39125272-39125354)
chr2 (137-183)||(39379675-39379721)
chr2 (288-344)||(39139996-39140052)
chr2 (107-183)||(39145001-39145077)
chr2 (288-320)||(39425302-39425334)
[»] chr5 (3 HSPs)
chr5 (107-183)||(33563213-33563289)
chr5 (278-358)||(33563372-33563452)
chr5 (299-340)||(17061239-17061280)
[»] chr6 (1 HSPs)
chr6 (286-358)||(16115260-16115332)
[»] chr4 (1 HSPs)
chr4 (292-359)||(33153120-33153187)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 29 - 359
Target Start/End: Original strand, 39371946 - 39372276
Alignment:
Q  29 aataactatggacattatatgcaaagatactaagattaatttattagttggtggagaaaaactgatatgtgattggttttaatgcttggaaagtgaagca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39371946 aataactatggacattatatgcaaagatactaagattaatttattagttggtggagaaaaactgatatgtgattggttttaatgcttggaaagtgaagca 39372045  T
Q  129 gacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattcagtacaatctgcttaattttttccttca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  39372046 gacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaatttttttgaaatattcagtacaatctgcttaattttttccttca 39372145  T
Q  229 ttaattcgaagtttataacttattttatgcctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattagga 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372146 ttaattcgaagtttataacttattttatgcctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattagga 39372245  T
Q  329 ggaagcaatttgttgtagctgttagattcat 359  Q
    |||||||||||||||||||||||||||||||    
T  39372246 ggaagcaatttgttgtagctgttagattcat 39372276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 39379598 - 39379530
Alignment:
Q  290 tcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  39379598 tcttgcaccttgcagattttgttgagaatcttatcaagaggaagcaatttgttgtagctgttagattca 39379530  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 39179550 - 39179673
Alignment:
Q  101 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctcc--ttttatgtatctcttctattttataaatggtttgaannnnnnngaaatat 198  Q
    ||||||||||||||| |||| ||||  ||||||||||||||||||||   |||||||||||||||||||||| ||||||||||||        ||||| |    
T  39179550 ttggttttaatgctttgaaaatgaattagacttgaaatttatctctctctttttatgtatctcttctattttctaaatggtttgataaattgtgaaatgt 39179649  T
Q  199 tcagtacaatctgcttaatttttt 222  Q
    ||||| ||||||||||| ||||||    
T  39179650 tcagttcaatctgcttagtttttt 39179673  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 358
Target Start/End: Complemental strand, 39386432 - 39386325
Alignment:
Q  251 ttttatgcctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgt 350  Q
    |||||||  ||||||| ||||||| | ||| ||| ||||||||||| ||| ||||||||||| || ||||||| | ||||||||||||||||| ||||||    
T  39386432 ttttatgtatgttctaataagttatgatgaagtgaaatttcttgcatcttccagattttgttaagcatcttatcaagaggaagcaatttgttgaagctgt 39386333  T
Q  351 tagattca 358  Q
    ||||||||    
T  39386332 tagattca 39386325  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 39386551 - 39386436
Alignment:
Q  109 aatgcttggaaagtgaagcagactt-gaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattcagtacaa 207  Q
    ||||||| |||| ||||  |||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||        |||||||||||| |||    
T  39386551 aatgctttgaaaatgaattagacttcgaaatttatctctccttttatgtatctcttctagtttctaaatggtttgacaaattttgaaatattcagttcaa 39386452  T
Q  208 tctgcttaattttttc 223  Q
    |||||||| |||||||    
T  39386451 tctgcttagttttttc 39386436  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 222
Target Start/End: Original strand, 39224558 - 39224679
Alignment:
Q  101 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttgaannnnnnngaaatattc 200  Q
    ||||||||||||||| |||| |||| |||| |||||||||||||||| |||  ||||||| | ||||||| ||||||||||||        |||||||||    
T  39224558 ttggttttaatgctttgaaaatgaaacagaattgaaatttatctctcttttcttgtatctatactattttctaaatggtttgacaaaatttgaaatattc 39224657  T
Q  201 agtacaatctgcttaatttttt 222  Q
    ||| || |||||||||||||||    
T  39224658 agttcattctgcttaatttttt 39224679  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 288 - 358
Target Start/End: Original strand, 39217461 - 39217531
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||||||||||||||| ||||||| |||||||||||||||  || |||||||||| ||||||||||||||    
T  39217461 tttcttgcaccttgcaggttttgttaagaatcttattaggaaaaaacaatttgttggagctgttagattca 39217531  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 39179713 - 39179785
Alignment:
Q  286 aatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||||||||| ||||||||||||||| || ||||||| |  ||||||||| |||||| ||||||||||||||    
T  39179713 aatttcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattca 39179785  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 39396294 - 39396222
Alignment:
Q  286 aatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    |||||||||  ||| |||||||||||| | |||||||| ||||| ||||| ||||||||||||||||||||||    
T  39396294 aatttcttgttcctcgcagattttgttaaaaatcttatcaggagaaagcagtttgttgtagctgttagattca 39396222  T

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Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 39224691 - 39224783
Alignment:
Q  259 ctgttctagtaagttacggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgtt 351  Q
    ||||| |||||||||  | ||| ||| ||||||||||| ||||||||||||||| ||  |||||| | |||||||||| |||||| |||||||    
T  39224691 ctgttgtagtaagttttgatgaagtgaaatttcttgcatcttgcagattttgttaagcgtcttatcatgaggaagcaaattgttgaagctgtt 39224783  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 39419885 - 39419841
Alignment:
Q  296 accttgcagattttgttgagaatcttattaggaggaagcaatttg 340  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  39419885 acctcgcagattttgttgagaatcttataaggaggaagcaatttg 39419841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 39188557 - 39188479
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttt--tatgtatctcttctattttataaatggtttga 183  Q
    ||||||||| |||| ||||| |||||| ||||||||||||| |||  ||||||| |||||||||||  |||||||||||    
T  39188557 ttaatgcttcgaaattgaagtagacttcaaatttatctctctttttatatgtatttcttctatttttcaaatggtttga 39188479  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39420071 - 39419997
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggttt 181  Q
    |||||||||| ||| ||||  | |||||||||||||||||| ||||| | |||||||| ||||| ||||||||||    
T  39420071 ttaatgcttgtaaaatgaaatatacttgaaatttatctctctttttacgcatctcttccattttctaaatggttt 39419997  T

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Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 361
Target Start/End: Original strand, 2363546 - 2363619
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcatct 361  Q
    |||| |||||||||||||||||||| |||||||||| | || | |||||| | |||  ||||||||||||||||    
T  2363546 tttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatct 2363619  T

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Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Complemental strand, 39471537 - 39471488
Alignment:
Q  296 accttgcagattttgttgagaat-cttattaggaggaagcaatttgttgt 344  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  39471537 accttgcagattttgttgagaaaacttattaggaagaagcaatttgttgt 39471488  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 39452109 - 39452177
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaa 175  Q
    |||||||||||||| ||||   |||||||||| |||||||| ||||||| |||||||| ||||| ||||    
T  39452109 ttaatgcttggaaaatgaaattgacttgaaatgtatctctctttttatgcatctcttccattttctaaa 39452177  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 44748567 - 44748619
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttg 340  Q
    |||||| ||||||||||||||||||||||||||||| | || |||| ||||||    
T  44748567 tttcttacaccttgcagattttgttgagaatcttatcaagatgaagaaatttg 44748619  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 39139828 - 39139908
Alignment:
Q  101 ttggttttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    ||||| ||||||| |||||| ||||  |||||| ||||| |||||||  || |||||||||||| || |||||||||||||||    
T  39139828 ttggtgttaatgcgtggaaaatgaaatagacttcaaattcatctctc--ttcatgtatctcttccatgttataaatggtttga 39139908  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 44625143 - 44625178
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttat 323  Q
    |||||| |||||||||||||||||||||||||||||    
T  44625143 tttcttacaccttgcagattttgttgagaatcttat 44625178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 358
Target Start/End: Original strand, 39125272 - 39125354
Alignment:
Q  276 ggtgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||| ||| ||||||||  ||||||||| |||||| ||||||||||| | |||  |||||| || || ||||||||||||||    
T  39125272 ggtgaagtgaaatttcttaaaccttgcagtttttgtcgagaatcttatcaagagacagcaatatgatgaagctgttagattca 39125354  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 39379721 - 39379675
Alignment:
Q  137 atttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    |||||||||||  ||||||||||| ||||||||| ||||||||||||    
T  39379721 atttatctctctatttatgtatcttttctattttctaaatggtttga 39379675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 39139996 - 39140052
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgt 344  Q
    ||||||| ||||| |||| ||||||||  ||||||| |||| |||||||||||||||    
T  39139996 tttcttgtaccttacagaatttgttgaagatcttatcaggaagaagcaatttgttgt 39140052  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 39145001 - 39145077
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    ||||||||| |||| ||||| || ||| |||| |||||||  || ||||||| |||||||||||  |||||||||||    
T  39145001 ttaatgctttgaaattgaagtaggcttcaaatatatctctttttatatgtatttcttctatttttcaaatggtttga 39145077  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 39425334 - 39425302
Alignment:
Q  288 tttcttgcaccttgcagattttgttgagaatct 320  Q
    ||||||||||||||||||||||||||| |||||    
T  39425334 tttcttgcaccttgcagattttgttgataatct 39425302  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 33563213 - 33563289
Alignment:
Q  107 ttaatgcttggaaagtgaagcagacttgaaatttatctctccttttatgtatctcttctattttataaatggtttga 183  Q
    ||||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  33563213 ttaatgctttgaaaatgaaatagacttgaaatttatctctcattttatgtatctcttctattttctaaatggtttga 33563289  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 33563372 - 33563452
Alignment:
Q  278 tgatgtggaatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||| ||| ||||||||||| ||||||||||||||| || ||||||| |  ||||||||| |||||| ||||||||||||||    
T  33563372 tgaagtgaaatttcttgcatcttgcagattttgttaagcatcttatcaacaggaagcaaattgttgcagctgttagattca 33563452  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 17061239 - 17061280
Alignment:
Q  299 ttgcagattttgttgagaatcttattaggaggaagcaatttg 340  Q
    ||||||||||||||||||||||||| | ||||||| ||||||    
T  17061239 ttgcagattttgttgagaatcttatcaagaggaaggaatttg 17061280  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 16115260 - 16115332
Alignment:
Q  286 aatttcttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattca 358  Q
    ||||||||| ||||||||||||||||| |  ||||||| ||||| ||||||||||||| ||||||||||||||    
T  16115260 aatttcttgtaccttgcagattttgttaaatatcttatcaggagaaagcaatttgttgaagctgttagattca 16115332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 33153120 - 33153187
Alignment:
Q  292 ttgcaccttgcagattttgttgagaatcttattaggaggaagcaatttgttgtagctgttagattcat 359  Q
    ||||| ||||||||||||||| ||||||||||  ||| |||||||  | ||| |||||||||||||||    
T  33153120 ttgcaacttgcagattttgttcagaatcttatccggaagaagcaacatattgaagctgttagattcat 33153187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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