View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_52 (Length: 356)
Name: NF0841_low_52
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_52 |
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| [»] chr4 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 44395854 - 44396205
Alignment:
| Q |
5 |
gaggagcagagagaggaaattgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgca |
104 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44395854 |
gaggaacagacagaggaaattgtatacaaacagtcctggttacaaatggcctagctataagcaaactatgtggagtcacattgtttttgaacatcctgca |
44395953 |
T |
|
| Q |
105 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44395954 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggta |
44396053 |
T |
|
| Q |
205 |
aagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatga |
304 |
Q |
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| T |
44396054 |
aagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatga |
44396153 |
T |
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| Q |
305 |
tttggagttaacagcagtgaaggataatactgagttgaggaagcttttgatt |
356 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44396154 |
tttagagttaacagcagtgaaggataatactgagttgaggaagcttttgatt |
44396205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 53395498 - 53395607
Alignment:
| Q |
207 |
gcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatgatt |
306 |
Q |
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||||||||||| |||||| | |||| |||||||||||| ||||| ||||| | ||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
53395498 |
gcttggaaaagaggttatcttctttatggtcctccaggaactggaaaatctagcatgattgctgctatggctaattttcttggttatgatatttatgatt |
53395597 |
T |
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| Q |
307 |
tggagttaac |
316 |
Q |
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|||||||||| |
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| T |
53395598 |
tggagttaac |
53395607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 53395396 - 53395452
Alignment:
| Q |
105 |
acttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttg |
161 |
Q |
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| T |
53395396 |
acttttgatacattggctatggatcctatgaagaagaaagagattatggaagatttg |
53395452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 85 - 356
Target Start/End: Original strand, 6971021 - 6971292
Alignment:
| Q |
85 |
ttgtttttgaacatcctgcaacttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaagga |
184 |
Q |
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|||| |||||||||||| |||| ||||||||| | |||||||| ||||||||||| ||| ||||| ||| | |||| ||||||||| | || |
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| T |
6971021 |
ttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaagctggtga |
6971120 |
T |
|
| Q |
185 |
tttttatgctaggattggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttg |
284 |
Q |
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|| ||||| || ||||| | ||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||| ||||| |||||| |
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| T |
6971121 |
attctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatggcaaatttg |
6971220 |
T |
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| Q |
285 |
ttgggttatgatgtttatgatttggagttaacagcagtgaaggataatactgagttgaggaagcttttgatt |
356 |
Q |
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| T |
6971221 |
ttaggctatgatctttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgatt |
6971292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 356
Target Start/End: Original strand, 6968259 - 6968480
Alignment:
| Q |
135 |
aagaagaaagagattattgaagatttggttacttttagtaaaagtaaggatttttatgctaggattggtaaagcttggaaaaggggttatttactttttg |
234 |
Q |
| |
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||||||||||||||| |||| ||| | ||||| || ||||| ||| || | |||||| | ||||| || ||||||| || || ||||| |||| || |
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| T |
6968259 |
aagaagaaagagattgttgatgatcttgttacattcagtaaggctaaagagtattatgcaaaaattggcaagccttggaagagaggctatttgctttatg |
6968358 |
T |
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| Q |
235 |
gtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatgatttggagttaacagcagtgaaggataatac |
334 |
Q |
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|||||||||| || || |||||| || | |||||||||| |||||||| ||| |||||| ||||||| | |||||||| ||||| ||||| | |
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| T |
6968359 |
gtcctccaggaacaggaaaatcatcactagttgctgctattgctaattttttgaagtatgatatttatgacattgagttaaccaatgtgaaaaataatgc |
6968458 |
T |
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| Q |
335 |
tgagttgaggaagcttttgatt |
356 |
Q |
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|||||| ||||| ||||||||| |
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| T |
6968459 |
tgagttaaggaaacttttgatt |
6968480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 210 - 356
Target Start/End: Original strand, 11449895 - 11450041
Alignment:
| Q |
210 |
tggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatgatttgg |
309 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||| ||||||||||||| |||| |||||||| ||||||| | | |
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| T |
11449895 |
tggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattggtgctatggctaatctgttaagttatgatctttatgaccttg |
11449994 |
T |
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| Q |
310 |
agttaacagcagtgaaggataatactgagttgaggaagcttttgatt |
356 |
Q |
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| || || || ||||||||||| |||| |||||||||||||||||| |
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| T |
11449995 |
aattgactgctgtgaaggataacactgcattgaggaagcttttgatt |
11450041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 340
Target Start/End: Original strand, 1800807 - 1800946
Alignment:
| Q |
201 |
ggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgttt |
300 |
Q |
| |
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||||| ||||||||| | ||||||||||||| |||||||||||| || |||||||| || ||||| || |||||||| ||||| || |||||||||| |
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| T |
1800807 |
ggtaaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatctactatgatagccgctatggcgaatttcatgaactatgatgttt |
1800906 |
T |
|
| Q |
301 |
atgatttggagttaacagcagtgaaggataatactgagtt |
340 |
Q |
| |
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||||| | || ||||| || || ||||||||||| ||||| |
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| T |
1800907 |
atgatcttgaattaaccgcggttaaggataataccgagtt |
1800946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 1800681 - 1800718
Alignment:
| Q |
75 |
tggagtcacattgtttttgaacatcctgcaacttttga |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
1800681 |
tggagtcacattgtttttgaacatcctgcgacttttga |
1800718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 2842237 - 2842321
Alignment:
| Q |
199 |
ttggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaattt |
283 |
Q |
| |
|
|||| |||||||||||| | |||||| ||||||||||||||||||| || |||||||| || ||||| | ||||| |||||||| |
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| T |
2842237 |
ttggaaaagcttggaaacgtggttatctactttttggtcctccaggaaccggtaaatctaccatgatatcggctattgctaattt |
2842321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 317
Target Start/End: Original strand, 2828887 - 2828997
Alignment:
| Q |
207 |
gcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttgttgggttatgatgtttatgatt |
306 |
Q |
| |
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||||||||| | |||||| |||||||||||||||| || ||||| ||||| || ||||| | ||||| |||||||| || ||||||||| |||||| |
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| T |
2828887 |
gcttggaaacgtggttatctactttttggtcctcctggaactggaaaatctacgatgatatcagctattgctaatttcatgaattatgatgtgtatgatc |
2828986 |
T |
|
| Q |
307 |
tggagttaaca |
317 |
Q |
| |
|
| ||||||||| |
|
|
| T |
2828987 |
ttgagttaaca |
2828997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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