View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_61 (Length: 317)
Name: NF0841_low_61
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 19972718 - 19972799
Alignment:
| Q |
145 |
ttattattatatacatttgtgagttcaaatcaatcattggcatgttgttccatatataaaagcttcatcaatgtttcctgtg |
226 |
Q |
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| T |
19972718 |
ttattattatatacatttgtgagttcaaatcaatcattggcatgttgttccatatataaaagcttcatcaatgtttcctgtg |
19972799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 19972585 - 19972625
Alignment:
| Q |
15 |
ttggataaatattttatcacacgaatgttaacattggaagt |
55 |
Q |
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| T |
19972585 |
ttggataaatattttatcacatgaatgttaacattggaagt |
19972625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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