View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_63 (Length: 307)
Name: NF0841_low_63
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_63 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 70 - 259
Target Start/End: Original strand, 36445572 - 36445761
Alignment:
| Q |
70 |
cacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagc |
169 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36445572 |
cacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttggc |
36445671 |
T |
|
| Q |
170 |
atcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagcagcaccgtgaccaccgtgacctcctccaccattgtaacc |
259 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36445672 |
atcatttacttcattagtcttttcctcagtttgcacggcaacagattcagcagcaccgtgaccaccatgacctcctccaccattgtaacc |
36445761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 70 - 276
Target Start/End: Original strand, 36435651 - 36435857
Alignment:
| Q |
70 |
cacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaact---tccaccatggttgtaactaccaccaccatattt |
166 |
Q |
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||||||||||||||| ||||| |||||| || |||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
36435651 |
cacctccaccgtggttgtaaccacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac---caccaccatattt |
36435747 |
T |
|
| Q |
167 |
agcatcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagcagcaccgtgaccaccgtgacctcctccaccattgtaaccgcctcca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
36435748 |
ggcatcatttacttcattagtcttttcctcagtttgcacggcaacagattcagcagcaccatgaccaccgtgacctcctccaccattgtaaccacctcca |
36435847 |
T |
|
| Q |
267 |
ccgtgacctc |
276 |
Q |
| |
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|||||||||| |
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| T |
36435848 |
ccgtgacctc |
36435857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 70 - 259
Target Start/End: Original strand, 36468017 - 36468194
Alignment:
| Q |
70 |
cacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccaccatatttagc |
169 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||| ||||||| | |||| |||| ||||| |||||||||| | | || |
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| T |
36468017 |
cacctcaaccgtggtggtaactacctcgtccatggttgtaactagctccacctttgttgaaactaccacct------------ccaccaccatttctggc |
36468104 |
T |
|
| Q |
170 |
atcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagcagcaccgtgaccaccgtgacctcctccaccattgtaacc |
259 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
36468105 |
atcatttacttcattagtcttttcctcagtttgcacggcaacagattcagcagcaccgcgaccaccatgacctcctccacgattgtaacc |
36468194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 36492969 - 36493043
Alignment:
| Q |
147 |
taactaccaccaccatatttagcatcatttacttcattagtcttttcctcagtttgcgcggcaacagattcagca |
221 |
Q |
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|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
36492969 |
taaccaccaccaccatatttggcatcatttacttcattagtcttttcctcagtttggacggcaacaaattcagca |
36493043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 36476148 - 36476189
Alignment:
| Q |
152 |
accaccaccatatttagcatcatttacttcattagtcttttc |
193 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36476148 |
accaccaccatatttggcatcatttacttcattagtcttttc |
36476189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 36493164 - 36493204
Alignment:
| Q |
153 |
ccaccaccatatttagcatcatttacttcattagtcttttc |
193 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
36493164 |
ccaccaccatatttggcatcgtttacttcattagtcttttc |
36493204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 36468194 - 36468241
Alignment:
| Q |
223 |
caccgtgaccaccgtgacctcctccaccattgtaaccgcctccaccgt |
270 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||| |||||||||| |
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| T |
36468194 |
caccgtgacctccgtggcctccaccaccattgtaaccacctccaccgt |
36468241 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 36435877 - 36435923
Alignment:
| Q |
86 |
gtaactacctcctccatggttgtaactacctccaccatggttgtaac |
132 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||| |||||||||| |
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| T |
36435877 |
gtaaccacctccgccatggttgtaaccacctccaccgtggttgtaac |
36435923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 36435981 - 36436043
Alignment:
| Q |
70 |
cacctccaccgtggtggtaactacctcctccatggttgtaactacctccaccatggttgtaac |
132 |
Q |
| |
|
|||||||||||| || ||||| ||| || ||||||||||||| ||||||||| | |||||||| |
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|
| T |
36435981 |
cacctccaccgttgttgtaaccaccaccaccatggttgtaaccacctccaccgttgttgtaac |
36436043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 36445788 - 36445833
Alignment:
| Q |
223 |
caccgtgaccaccgtgacctcctccaccattgtaaccgcctccacc |
268 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||| |||||||| |
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| T |
36445788 |
caccgtgacctccgtggcctccaccaccattgtaaccacctccacc |
36445833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 36475995 - 36476051
Alignment:
| Q |
104 |
gttgtaactacctccaccatggttgtaacttccaccatggttgtaactaccaccacc |
160 |
Q |
| |
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|||||||| |||||||||||||||||| | ||||||| |||||| | ||||||||| |
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| T |
36475995 |
gttgtaaccacctccaccatggttgtatccaccaccattgttgtatccaccaccacc |
36476051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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