View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_64 (Length: 301)
Name: NF0841_low_64
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 294
Target Start/End: Original strand, 20868040 - 20868308
Alignment:
| Q |
29 |
aaggggaatatagaacaaaactatgggtgtttgagttgtgaatattcgatgcatgtatgttagtttttccgtgcatggtctgtaagagccactaagatta |
128 |
Q |
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| T |
20868040 |
aaggggaatatagaacaaaactatgggtgtttgagttgtgaatattcgatgcatgtctgttagtttttttgtgcatggtctgtaagagccactaagatta |
20868139 |
T |
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| Q |
129 |
agtttatggttaggagtttcagc---agtctgtattaggtcatgaaaaatgaaacgttcaattagcaaatcccatgtaattcgtatccttaagtaaatcg |
225 |
Q |
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| T |
20868140 |
tgtttatggttaggagtttcagcagcagtctgtattaggtcatgaaaaatgaaacgttcaattagcaaatcccatgtaatccgtatccttaagtaaatcg |
20868239 |
T |
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| Q |
226 |
agttagctcataaaaaattaaaactcaaatgatgtttgccgacacaaatgatatattcctcctttgttt |
294 |
Q |
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| T |
20868240 |
agttagctcatgaaaaattaaaactcaaatgatgtttgccgacacaaatgatatattcctcctttgttt |
20868308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 3408380 - 3408524
Alignment:
| Q |
108 |
ctgtaagagccactaagattaagtttatggttaggagtttcagcagtctgtattaggtcatgaaaaatgaaacgttcaattagcaaa-tcccatgtaatt |
206 |
Q |
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| T |
3408380 |
ctgtaagagccactaagattaagtttatggttaggagtttcagcagtctgtattaggacatgagaaatgaaacg-tcaattagcaaattcccatgtaatt |
3408478 |
T |
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| Q |
207 |
cgtatccttaagtaaatcgagttagctcataaaaaattaaaactca |
252 |
Q |
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| T |
3408479 |
cgtatccttaagtaaatcgagttagctcatgaaaaattaaaactca |
3408524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 3403696 - 3403781
Alignment:
| Q |
31 |
ggggaatatagaacaaaactatgggtgtttgagttgtgaatattcgatgcatgtatgttagtttttccgtgcatggtctgtaagag |
116 |
Q |
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| T |
3403696 |
ggggattatagaacaaaactatgggtgtttgagttgtgaatattcaatgcatgtctgttagtttttccgtgcatggtctgtaagag |
3403781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 7130051 - 7129934
Alignment:
| Q |
40 |
agaacaaaactatgggtgtttgagttgtgaatattcgatgcatgtatgttagtttttccgtgcatggtctgtaagagccactaagattaagtttatggtt |
139 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| |||| |
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| T |
7130051 |
agaacaaaactatgggtgtttgagttgtgaatattctttgcatgtctgttagttttgcagtgcatggtcagtaagagccactaagattaagtttgtggtg |
7129952 |
T |
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| Q |
140 |
aggagtttcagcagtctg |
157 |
Q |
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| T |
7129951 |
aggaatttcagcagtctg |
7129934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 44738021 - 44738064
Alignment:
| Q |
251 |
caaatgatgtttgccgacacaaatgatatattcctcctttgttt |
294 |
Q |
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| T |
44738021 |
caaatgatgtttgccgacacaaatgatatattcctcctttgttt |
44738064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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