View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_65 (Length: 298)
Name: NF0841_low_65
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 49075385 - 49075142
Alignment:
| Q |
30 |
gaaggttgaaaagaaacaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgacaacgggg |
129 |
Q |
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| T |
49075385 |
gaaggttgaaaagaaacaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgacaacgggg |
49075286 |
T |
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| Q |
130 |
tttaggaactggaacaagaaaactgtccctgttgggagtagttttatgaggcttccaattccaccaatactcttttttatggtacttgttgcagttgttg |
229 |
Q |
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| T |
49075285 |
tttaggaactggaacaagaaaactgtccctgttgggagtagttttatgaggcttccaattccacctatactcttttttatggtacttgttgcagttgttg |
49075186 |
T |
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| Q |
230 |
tttccgtgttaaaggttgaatgtgaagcaattgtctcatttcca |
273 |
Q |
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| T |
49075185 |
tttccgtgttaaaggttgaatgtgaagcaattgtctcatttcca |
49075142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 49068660 - 49068906
Alignment:
| Q |
30 |
gaaggttgaaaagaaacaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgacaacgggg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49068660 |
gaaggttgaaaagaaacaattgaaaccacatattacaagtaaaattgagctaaggtacttgttgcttgttttgcatcgaccactatttgtgacaacgggg |
49068759 |
T |
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| Q |
130 |
tttaggaactggaacaagaaaactgtccctgttgggagtagttttatgaggcttccaattccaccaatactcttttttatggtacttgttgca---gttg |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |
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| T |
49068760 |
tttaggaactggaacaagaaaactgtccctgttgggagtagttttatgaggcttccaattccaccaatactcttttttatggtacttcttgcaggtgctg |
49068859 |
T |
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| Q |
227 |
ttgtttccgtgttaaaggttgaatgtgaagcaattgtctcatttcca |
273 |
Q |
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| T |
49068860 |
ttgtttctgtgtttaagcttgaatgtgaagcaattgtctcatttcca |
49068906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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