View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_7 (Length: 768)
Name: NF0841_low_7
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 28 - 761
Target Start/End: Complemental strand, 11246899 - 11246168
Alignment:
| Q |
28 |
cagattcgacattagctactcctgatcaattcggcgttaactgaagctcgttaagcacttgagctcaacggggggttgagtagcttgattggtttgagct |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246899 |
cagattcgacattagctactcctgatcaattcggcgttaactgaagctcgttaagcacttgagctcaacggggggttgagtagcttgattggtttgagcc |
11246800 |
T |
|
| Q |
128 |
aagggttaagtagtagggggactcgggttcaaaccccggtgaatgagaaaaatgttaatctaacaactaattattaacattgcttgtttaaaagnnnnnn |
227 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246799 |
aagggttaagtagtagggggagtcgggttcaaaccccggtgaatgagaaaaatgttaatctaacaactaattattaacattgcttgtttaaaagaaaaaa |
11246700 |
T |
|
| Q |
228 |
nnnntcttgagctcaatcacttgattaatttgattatgaacatgaagttattttagcttatgttaatgattcctgtgtggctatgtgtaggttttacaaa |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
11246699 |
aa--tcttgagctcaatcacttgattaatttgattatgaacatgaagttattttagcttatgttaatgattcctttgtggctatgtgtaggtttttcaaa |
11246602 |
T |
|
| Q |
328 |
tgtttcagcagtaaaatggcctttcttgaacaaagtcgctgttcattcatatttgacgccttttaaagtttctgaagacgataaggctaaaatgatatct |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246601 |
tgtttcagcagtaaaatggcctttcttgaacaaagtcgctgttcattcatatttgacgccttttaaagtttctgaagacgataaggctaaaatgatatct |
11246502 |
T |
|
| Q |
428 |
tctggtttcatacaggtttgttaatattctttctctcaatttctgttttttgttaaaaaattgtgaagttaggacaacattcagttaatcaggatttcaa |
527 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246501 |
tctggtttcatacaggtttgttaatatcctttctctaaatttctgttttttgttgaaaaattgtgaagttaggacaacattcagttaatcaggatttcaa |
11246402 |
T |
|
| Q |
528 |
attcattaaatttaagcgattaaaacaaattcacttttagagggtcgttggactcgagcgtgagtagatgggtattttaattttcagttcaatctgctta |
627 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
11246401 |
agtcattaaatttaagcgattaaaacagattcacttttagagggtcgttggactcgagcgtgagcagataggtattttaattttcagttcaatctgctta |
11246302 |
T |
|
| Q |
628 |
cggtatctatcaattatacaagtctttttaggatatgattcatatgaaattgcttttcagatccgaacataattttaggatgttttgctacatatcatgt |
727 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11246301 |
cggtatctatcaattatacaagtctttttaggatatgattcatatgaaattgcttttcagatccgaacataattttaggatgttttgctacatatcatgt |
11246202 |
T |
|
| Q |
728 |
ctacatttgatctcacatttaataagtataatct |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
11246201 |
ctacatttgatctcacatttaataagtataatct |
11246168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 30005693 - 30005739
Alignment:
| Q |
100 |
gggttgagtagcttgattggtttgagctaagggttaagtagtagggg |
146 |
Q |
| |
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|||||| ||||||| |||||||||||| |||||||||||||| |||| |
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|
| T |
30005693 |
gggttgggtagcttaattggtttgagccaagggttaagtagttgggg |
30005739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 36665347 - 36665306
Alignment:
| Q |
99 |
ggggttgagtagcttgattggtttgagctaagggttaagtag |
140 |
Q |
| |
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||||||| ||||||| | |||||||||||||||||||||||| |
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| T |
36665347 |
ggggttgggtagcttaactggtttgagctaagggttaagtag |
36665306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 22896175 - 22896212
Alignment:
| Q |
100 |
gggttgagtagcttgattggtttgagctaagggttaag |
137 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||| |
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| T |
22896175 |
gggttgagtacctcgattggtttgagctaagggttaag |
22896212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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