View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_73 (Length: 275)

Name: NF0841_low_73
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_73
NF0841_low_73
[»] chr5 (7 HSPs)
chr5 (42-273)||(29572595-29572825)
chr5 (42-273)||(29573972-29574202)
chr5 (42-273)||(29575349-29575579)
chr5 (42-273)||(29576726-29576956)
chr5 (42-273)||(29578103-29578333)
chr5 (42-273)||(29579480-29579710)
chr5 (77-244)||(23923048-23923215)
[»] chr7 (4 HSPs)
chr7 (75-180)||(23054802-23054907)
chr7 (93-180)||(47923910-47923997)
chr7 (83-184)||(5865312-5865413)
chr7 (122-183)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (112-180)||(4422889-4422957)
chr1 (122-150)||(48265586-48265614)
[»] chr3 (3 HSPs)
chr3 (73-170)||(9509949-9510046)
chr3 (73-170)||(9517924-9518021)
chr3 (122-183)||(25132349-25132410)
[»] chr6 (1 HSPs)
chr6 (83-184)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29572825 - 29572595
Alignment:
Q  42 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 141  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29572825 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29572726  T
Q  142 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 241  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29572725 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29572626  T
Q  242 ctagatcaaaacaacagcctaaaacgccgaca 273  Q
    ||||||| ||||||||||||||||||| ||||    
T  29572625 ctagatc-aaacaacagcctaaaacgctgaca 29572595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29574202 - 29573972
Alignment:
Q  42 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 141  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29574202 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29574103  T
Q  142 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 241  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29574102 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29574003  T
Q  242 ctagatcaaaacaacagcctaaaacgccgaca 273  Q
    ||||||| ||||||||||||||||||| ||||    
T  29574002 ctagatc-aaacaacagcctaaaacgctgaca 29573972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29575579 - 29575349
Alignment:
Q  42 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 141  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29575579 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29575480  T
Q  142 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 241  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29575479 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29575380  T
Q  242 ctagatcaaaacaacagcctaaaacgccgaca 273  Q
    ||||||| ||||||||||||||||||| ||||    
T  29575379 ctagatc-aaacaacagcctaaaacgctgaca 29575349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29576956 - 29576726
Alignment:
Q  42 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 141  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29576956 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29576857  T
Q  142 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 241  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29576856 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29576757  T
Q  242 ctagatcaaaacaacagcctaaaacgccgaca 273  Q
    ||||||| ||||||||||||||||||| ||||    
T  29576756 ctagatc-aaacaacagcctaaaacgctgaca 29576726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29578333 - 29578103
Alignment:
Q  42 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 141  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29578333 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29578234  T
Q  142 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 241  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29578233 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29578134  T
Q  242 ctagatcaaaacaacagcctaaaacgccgaca 273  Q
    ||||||| ||||||||||||||||||| ||||    
T  29578133 ctagatc-aaacaacagcctaaaacgctgaca 29578103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 273
Target Start/End: Complemental strand, 29579710 - 29579480
Alignment:
Q  42 ttacaaaccaagcagtcggccgataccgaaacaagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactc 141  Q
    |||||||||||||||||  |||||||| |||||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||    
T  29579710 ttacaaaccaagcagtcaaccgatacccaaacaaatgatcggaaacattaccctgcaaaataacgttagaaagtaatatcctacactccgctaacaactc 29579611  T
Q  142 ctcctcccataaccataacctcctcctccattgccaagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccg 241  Q
    ||||||||||| ||| ||| |||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||    
T  29579610 ctcctcccatatccacaacatccttctccattgccaagcctcaccccctccccccatcctagagagaacatagtagcaactaaagacaacatgttctccg 29579511  T
Q  242 ctagatcaaaacaacagcctaaaacgccgaca 273  Q
    ||||||| ||||||||||||||||||| ||||    
T  29579510 ctagatc-aaacaacagcctaaaacgctgaca 29579480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 77 - 244
Target Start/End: Original strand, 23923048 - 23923215
Alignment:
Q  77 tgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgcc 176  Q
    ||||| ||||||||| |||||||||||| |||||||||| |||  |||||||||||||||| |||||||||||| | ||| |||||||||||||| ||||    
T  23923048 tgatcagaaacattaacctgcaaaataacgttagaaagtaacaacctacactccgctaacatctcctcctcccacacccacaacctcctcctccactgcc 23923147  T
Q  177 aagcctcannnnnnnnnnnnatcctagagagaacatagtagcaactaaagacaacatgttctccgcta 244  Q
    ||||||||            | ||||||| |||||||||||||||| |||||||| ||||||||||||    
T  23923148 aagcctcaccccctccccccaacctagagggaacatagtagcaactgaagacaacttgttctccgcta 23923215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 23054907 - 23054802
Alignment:
Q  75 agtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattg 174  Q
    ||||||| |||| || | |||||| ||||| |||||||||| | || |||||||||||||||| ||  |||||||| | ||| |||||||||||||| ||    
T  23054907 agtgatccgaaatatcaacctgcataataaagttagaaagtaatatcctacactccgctaacatcttttcctcccacacccacaacctcctcctccactg 23054808  T
Q  175 ccaagc 180  Q
    ||||||    
T  23054807 ccaagc 23054802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 47923910 - 47923997
Alignment:
Q  93 cctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 180  Q
    ||||||||| || |||||||||| || |  |||||||| |||||| ||| |||||||| | ||| |||||||||||||| ||||||||    
T  47923910 cctgcaaaacaacgttagaaagtaacgtcatacactcctctaacatctcttcctcccacacccacaacctcctcctccactgccaagc 47923997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 5865312 - 5865413
Alignment:
Q  83 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 182  Q
    |||||||||  ||||||| |||  |||| |||| |||  |||||||||||||||||||||||||| ||   ||| ||| ||| |||||| ||||| ||||    
T  5865312 gaaacattaatctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcctcctctcacgcccacaacatccgcctccactgccacgcct 5865411  T
Q  183 ca 184  Q
    ||    
T  5865412 ca 5865413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 22819613 - 22819552
Alignment:
Q  122 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 183  Q
    ||||||||| |||||||||||||||||||   ||| |||||||| | ||||||||| |||||    
T  22819613 ctacactcccctaacaactcctcctcccaggcccacaacctcctacgccattgccacgcctc 22819552  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 4422889 - 4422957
Alignment:
Q  112 aagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagc 180  Q
    |||| |||| |||||||||||||||||||| ||||| |||| ||| |||||||||||||| ||||||||    
T  4422889 aagtaacatcctacactccgctaacaactcttcctctcatacccacaacctcctcctccactgccaagc 4422957  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 48265614 - 48265586
Alignment:
Q  122 ctacactccgctaacaactcctcctccca 150  Q
    |||||||||||||||||||||||||||||    
T  48265614 ctacactccgctaacaactcctcctccca 48265586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 9509949 - 9510046
Alignment:
Q  73 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 170  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9509949 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9510046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 9517924 - 9518021
Alignment:
Q  73 caagtgatcggaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctcc 170  Q
    ||||||||| |||||| ||  | ||||| |||  |||| |||| | || ||||||||||||| ||||||||||||||||  ||| |||||||||||||    
T  9517924 caagtgatctgaaacactagacagcaaagtaacattagcaagtaagatcctacactccgctaccaactcctcctcccatgcccacaacctcctcctcc 9518021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 25132349 - 25132410
Alignment:
Q  122 ctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcctc 183  Q
    ||||||||| |||  |||||||||||||| | ||| |||||||| ||||||| |||||||||    
T  25132349 ctacactcccctagtaactcctcctcccacacccacaacctccttctccatttccaagcctc 25132410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 900789 - 900688
Alignment:
Q  83 gaaacattaccctgcaaaataatgttagaaagtgacattctacactccgctaacaactcctcctcccataaccataacctcctcctccattgccaagcct 182  Q
    ||||||||  |||||||| |||  |||| |||| |||  |||||||||||||||||||| ||||||||   ||| ||||||||| | || ||||| ||||    
T  900789 gaaacattgacctgcaaagtaacattagcaagtaacaacctacactccgctaacaactcatcctcccacgcccacaacctcctctttcactgccacgcct 900690  T
Q  183 ca 184  Q
    ||    
T  900689 ca 900688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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