View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_78 (Length: 264)
Name: NF0841_low_78
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_78 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 42 - 264
Target Start/End: Complemental strand, 18782766 - 18782544
Alignment:
| Q |
42 |
ataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataagttaatccgaaaagaccatattaccaacacc |
141 |
Q |
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| T |
18782766 |
ataagttgctttcataagttctcggaaagagtttcttaaatgtttatgccagcacataaattcaaataagttaatccgaaaagaccatattaccaacacc |
18782667 |
T |
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| Q |
142 |
aaacacactaccaccaacactaatacgcagttatttaaaattattaaatgtaaggtgtttaatgttgatccgtgacacatgaccgataacacacactttc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18782666 |
aaacacactaccaccaacactaatacgcagttatttaaaattattaaatgtaaggtgtttaatgttgatccgtgacacatgaccgataacacacactttc |
18782567 |
T |
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| Q |
242 |
aatcagaggtgttcgtactatat |
264 |
Q |
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||||||||||||||||||||||| |
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| T |
18782566 |
aatcagaggtgttcgtactatat |
18782544 |
T |
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