View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_87 (Length: 251)

Name: NF0841_low_87
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_87
NF0841_low_87
[»] chr6 (5 HSPs)
chr6 (1-176)||(341806-341981)
chr6 (1-164)||(337780-337943)
chr6 (3-165)||(377533-377695)
chr6 (3-123)||(346807-346927)
chr6 (3-123)||(355466-355586)
[»] chr7 (3 HSPs)
chr7 (5-123)||(12164242-12164360)
chr7 (5-123)||(12175767-12175885)
chr7 (92-132)||(1033937-1033977)
[»] chr4 (1 HSPs)
chr4 (5-126)||(3321649-3321770)
[»] chr8 (1 HSPs)
chr8 (5-123)||(36668094-36668212)
[»] chr1 (4 HSPs)
chr1 (95-157)||(12963946-12964008)
chr1 (70-156)||(30368180-30368266)
chr1 (92-120)||(13891606-13891634)
chr1 (92-132)||(13895945-13895985)


Alignment Details
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 341981 - 341806
Alignment:
Q  1 tcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341981 tcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggctta 341882  T
Q  101 aactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatatcatattcttcg 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  341881 aactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatatcatattattcg 341806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 337943 - 337780
Alignment:
Q  1 tcttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggctta 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||     
T  337943 tcttcccaaacaagtccttggtccagcattaaaactaaagaatttgtaagatggtgcataaacaatgcctcctctctcagaaatccacctctctggcttg 337844  T
Q  101 aactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaata 164  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  337843 aactccaagcaatcttctccccaaatatttgcatcccttcccattgaatacaaagaaaaaaata 337780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 377695 - 377533
Alignment:
Q  3 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 102  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||||  ||| ||||||||  ||||||||||| ||||| ||||||||||| ||    
T  377695 ttcccaaacaagtccttggtccagcattaaaactaaagaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaa 377596  T
Q  103 ctccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaaaacaatat 165  Q
    |||||||||||||| |||||| || | ||||   || ||||||| |||||||||||| |||||    
T  377595 ctccaagcaatcttctccccatatctcttcaaatctccccattgaatacaaagaaaataatat 377533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 346807 - 346927
Alignment:
Q  3 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 102  Q
    ||||||||||||| ||||||||||||||| ||||||  ||||||||||| || | || ||||||||||||||||||||| ||||| ||||||||||| ||    
T  346807 ttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaa 346906  T
Q  103 ctccaagcaatcttttcccca 123  Q
    |||||| ||||||||||||||    
T  346907 ctccaaacaatcttttcccca 346927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 355466 - 355586
Alignment:
Q  3 ttcccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaa 102  Q
    ||||||||||||| ||||||||||||||| ||||||  ||||||||||| || | || ||||||||||||||||||||| ||||| ||||||||||| ||    
T  355466 ttcccaaacaagttctaggtccagcattataactaataaacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaa 355565  T
Q  103 ctccaagcaatcttttcccca 123  Q
    |||||| ||||||||||||||    
T  355566 ctccaaacaatcttttcccca 355586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 12164242 - 12164360
Alignment:
Q  5 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 104  Q
    ||||||||| |||| |||||||||||||||  || |||||||||||| ||  ||||||| || |||||| | | |||||||||||||||||||||||| |    
T  12164242 cccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatccctcctttttgagaaatccacctctctggcttaaatt 12164341  T
Q  105 ccaagcaatcttttcccca 123  Q
    |||||||||||| ||||||    
T  12164342 ccaagcaatcttctcccca 12164360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 12175767 - 12175885
Alignment:
Q  5 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 104  Q
    ||||||||| |||| ||||||||||| |||  || |||||||||||| ||  ||| ||  || |||||| ||| |||||||||||||||||| ||||| |    
T  12175767 cccaaacaactccttggtccagcattgaaagcaatgaacttgtaagagggaacatgaattatccctcctttcttagaaatccacctctctggtttaaatt 12175866  T
Q  105 ccaagcaatcttttcccca 123  Q
     ||| ||||||| ||||||    
T  12175867 tcaaacaatcttctcccca 12175885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 1033937 - 1033977
Alignment:
Q  92 tctggcttaaactccaagcaatcttttccccaaatattttc 132  Q
    |||||||| |||||||||||||||||||| || ||||||||    
T  1033937 tctggcttgaactccaagcaatcttttcctcatatattttc 1033977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 3321770 - 3321649
Alignment:
Q  5 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 104  Q
    ||||||||| |||| ||||||||||| |||  ||  ||||||||||| ||  ||| ||  ||  ||||| ||| |||||||||||||||||| |||||||    
T  3321770 cccaaacaactccttggtccagcattgaaagcaataaacttgtaagaaggtacatgaattatttctcctttcttagaaatccacctctctggtttaaact 3321671  T
Q  105 ccaagcaatcttttccccaaat 126  Q
    |||||||||||| |||||||||    
T  3321670 ccaagcaatcttctccccaaat 3321649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 36668094 - 36668212
Alignment:
Q  5 cccaaacaagtcctaggtccagcattaaaactaaagaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaact 104  Q
    ||||||| | |||| ||||||||||| |||  || |||||||||||| ||  ||| ||   | |||||| ||| ||||| |||||||||||| ||||| |    
T  36668094 cccaaacgactccttggtccagcattgaaagcaatgaacttgtaagaaggtacatgaattgtccctcctttcttagaaacccacctctctggtttaaatt 36668193  T
Q  105 ccaagcaatcttttcccca 123  Q
    |||||||||||| ||||||    
T  36668194 ccaagcaatcttctcccca 36668212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 12964008 - 12963946
Alignment:
Q  95 ggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaagaa 157  Q
    |||||||| ||||||||||||| |||||| || | |||   ||||||||||||||||||||||    
T  12964008 ggcttaaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaa 12963946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 30368266 - 30368180
Alignment:
Q  70 tcctctctcagaaatccacctctctggcttaaactccaagcaatcttttccccaaatattttcatcccttcccattgcatacaaaga 156  Q
    ||||||||| || | ||| ||||| |||||||| |||| |||||||| |||||| || |||||   ||||||||| |||||||||||    
T  30368266 tcctctctctgatacccatctctcaggcttaaattccatgcaatcttctccccatattttttccatccttcccatagcatacaaaga 30368180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 13891606 - 13891634
Alignment:
Q  92 tctggcttaaactccaagcaatcttttcc 120  Q
    |||||||||||||||||||||||||||||    
T  13891606 tctggcttaaactccaagcaatcttttcc 13891634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 13895945 - 13895985
Alignment:
Q  92 tctggcttaaactccaagcaatcttttccccaaatattttc 132  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  13895945 tctggcttgaactccaagcaatcttttccccatatgttttc 13895985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2746 times since January 2019
Visitors: 6167