View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_9 (Length: 714)
Name: NF0841_low_9
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 307 - 703
Target Start/End: Complemental strand, 55337457 - 55337065
Alignment:
| Q |
307 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
406 |
Q |
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| T |
55337457 |
taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt |
55337358 |
T |
|
| Q |
407 |
atctaagaacctatttgtttaatacctcccataactctt-gtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
505 |
Q |
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| T |
55337357 |
atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa |
55337258 |
T |
|
| Q |
506 |
tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
605 |
Q |
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| T |
55337257 |
tagtata-----tatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca |
55337163 |
T |
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| Q |
606 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaata |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337162 |
cacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaagaata |
55337065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 258
Target Start/End: Complemental strand, 55337703 - 55337473
Alignment:
| Q |
28 |
catatatgctatttgaattccacagattcaagttttatgttgtggcaactaagctgattcttcttcttccaacagatggaacagacaactaactagacat |
127 |
Q |
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| T |
55337703 |
catatatgctatttgaattccacagattcaagttttatgttgtggcaactaagctgattcttcttcttccaacagatggaacagacaactaactagacat |
55337604 |
T |
|
| Q |
128 |
ctaagctggaacaaaaacannnnnnnaatttgagacagaaaatatttgtctttgcaattgtgaacaagttttataacctgggaaaattgttttaatttct |
227 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337603 |
ctaagctggaacaaaaacatttttttaatttgagacagaaaataattgtctttgcaattgtgaacaagttttataacctgggaaaattgttttaatttcg |
55337504 |
T |
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| Q |
228 |
tataacatcttgaattattgtctattaattt |
258 |
Q |
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| T |
55337503 |
tataacatcttgaattattgtctattaattt |
55337473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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