View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0841_low_91 (Length: 250)

Name: NF0841_low_91
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0841_low_91
NF0841_low_91
[»] chr7 (6 HSPs)
chr7 (86-238)||(31853200-31853351)
chr7 (27-148)||(36326269-36326388)
chr7 (88-168)||(28138759-28138840)
chr7 (112-174)||(28139426-28139488)
chr7 (129-174)||(5728181-5728226)
chr7 (137-177)||(2377206-2377246)
[»] chr5 (5 HSPs)
chr5 (87-166)||(25787840-25787920)
chr5 (112-174)||(40266579-40266641)
chr5 (94-148)||(11135747-11135802)
chr5 (88-160)||(39222979-39223052)
chr5 (88-159)||(6636908-6636980)
[»] chr8 (3 HSPs)
chr8 (96-174)||(3588536-3588615)
chr8 (115-158)||(31762867-31762910)
chr8 (198-238)||(31762397-31762437)
[»] chr3 (3 HSPs)
chr3 (94-148)||(3539674-3539729)
chr3 (88-148)||(26998304-26998365)
chr3 (93-168)||(33448504-33448580)
[»] chr2 (4 HSPs)
chr2 (88-174)||(12965049-12965136)
chr2 (114-166)||(19984702-19984754)
chr2 (87-160)||(22727661-22727735)
chr2 (110-163)||(38226219-38226272)
[»] chr4 (1 HSPs)
chr4 (94-148)||(54208186-54208241)
[»] chr6 (3 HSPs)
chr6 (87-144)||(1826580-1826638)
chr6 (84-148)||(7203968-7204033)
chr6 (88-148)||(14153354-14153415)
[»] chr1 (1 HSPs)
chr1 (112-174)||(5603152-5603214)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 31853351 - 31853200
Alignment:
Q  86 atgaatcctgctctttatccaaatatttt-gctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgttatacctcgcgt 184  Q
    |||||| |||||| ||||||||||| ||  ||||||||  ||||||||||| |||||||||  ||||||| ||||||||||||| |||||||  || |||    
T  31853351 atgaattctgctcattatccaaatagttccgctcatttttaaaataaatgaccaaaatacc--tgcgtgagttaactcacgctagtgttataattcacgt 31853254  T
Q  185 gagttaacacacttaaaccaattctctcccaaattgcaattttacgtcgattca 238  Q
    |||||||| ||  |||| ||||||||||||||||| |||||||  |||||||||    
T  31853253 gagttaactcatgtaaatcaattctctcccaaattacaattttcggtcgattca 31853200  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 36326388 - 36326269
Alignment:
Q  27 tcttgcatgacattgaggatcaaactaagaaagnnnnnnnntattaacactgaataatgatgaatcctgctctttatccaaata-ttttgctcatttcca 125  Q
    ||||||||||||||||||||||||||||||||         ||||||||| |||||||||||||| || |||||||| |||| | ||||| |||||||||    
T  36326388 tcttgcatgacattgaggatcaaactaagaaa---aaaaaatattaacaccgaataatgatgaattctactctttattcaaacagttttgttcatttcca 36326292  T
Q  126 aaataaatgatcaaaatacccct 148  Q
    |||||||||||||||||||||||    
T  36326291 aaataaatgatcaaaatacccct 36326269  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 28138759 - 28138840
Alignment:
Q  88 gaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgcta 168  Q
    |||| |||||||||| |||||| |||||||||||| ||||| ||||||| |||||||||||||||||| |||||||||||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctgcgtgacttaactcacgcta 28138840  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 28139488 - 28139426
Alignment:
Q  112 tttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 174  Q
    ||||| |||| ||||| ||||||| |||||| ||||||||||| ||||||||||||| |||||    
T  28139488 tttgcccattcccaaagtaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgtta 28139426  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 5728181 - 5728226
Alignment:
Q  129 taaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 174  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  5728181 taaatgatcaaaatgcccctgcgtgagttaattcacgctaatgtta 5728226  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 2377206 - 2377246
Alignment:
Q  137 caaaatacccctgcgtgaattaactcacgctaatgttatac 177  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  2377206 caaaatacccctgcgtgagttaactcacgcaaatgttatac 2377246  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 25787920 - 25787840
Alignment:
Q  87 tgaatcctgctctttatccaaatattt-tgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgc 166  Q
    ||||| ||||||||||||||||   || |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||    
T  25787920 tgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaactcacgc 25787840  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 40266641 - 40266579
Alignment:
Q  112 tttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 174  Q
    |||||||||| ||||| ||||||| |||||| ||| ||||||| |||||||||||||||||||    
T  40266641 tttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaactcacgctaatgtta 40266579  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 11135747 - 11135802
Alignment:
Q  94 tgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccct 148  Q
    ||||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||    
T  11135747 tgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccct 11135802  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 39222979 - 39223052
Alignment:
Q  88 gaatcctgctctttatcca-aatattttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaac 160  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||| | ||||||| ||| | ||||| |||||    
T  39222979 gaattctgctctttacccagaatattttgctcatttccaaaataaaagttcaaaatgcccttacgtgatttaac 39223052  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 6636980 - 6636908
Alignment:
Q  88 gaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaa 159  Q
    |||| |||||| |||||||||| | | || ||||| ||||||||||||| ||||||| |||||||||| ||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccctgcgtgagttaa 6636908  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 3588615 - 3588536
Alignment:
Q  96 ctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 174  Q
    ||||||| |||||| | |||||||||| ||||| ||||||| |||||| ||||||||||| ||||||||||||| |||||    
T  3588615 ctctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccctgcgtgagttaactcacgctagtgtta 3588536  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 31762910 - 31762867
Alignment:
Q  115 gctcatttccaaaataaatgatcaaaatacccctgcgtgaatta 158  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||    
T  31762910 gctcatttccaaagtaaatgaacaaaataccccttcgtgaatta 31762867  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 31762397 - 31762437
Alignment:
Q  198 taaaccaattctctcccaaattgcaattttacgtcgattca 238  Q
    ||||||||||||| ||||||||||||||||  |||||||||    
T  31762397 taaaccaattctcccccaaattgcaattttcggtcgattca 31762437  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 3539674 - 3539729
Alignment:
Q  94 tgctctttatccaaata-ttttgctcatttccaaaataaatgatcaaaatacccct 148  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  3539674 tgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccct 3539729  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 26998365 - 26998304
Alignment:
Q  88 gaatcctgctctttatccaaatatttt-gctcatttccaaaataaatgatcaaaatacccct 148  Q
    |||| |||||||| ||||||||  ||| ||||||||| ||||||||||||||||||| ||||    
T  26998365 gaattctgctcttcatccaaatggtttcgctcatttctaaaataaatgatcaaaatatccct 26998304  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 33448504 - 33448580
Alignment:
Q  93 ctgctctttatccaaa-tattttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgcta 168  Q
    |||||||||||||||| | ||||||||||||| |||  ||||| ||||||| ||| | ||||| |||| ||||||||    
T  33448504 ctgctctttatccaaactgttttgctcatttctaaagaaaatgttcaaaatgcccttacgtgacttaaatcacgcta 33448580  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 12965049 - 12965136
Alignment:
Q  88 gaatcctgctctttatccaaatattt-tgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 174  Q
    |||| |||||||||| |||||  ||| ||||||||| |||| |||||||||||||| | ||| ||||| |||||||||||||||||||    
T  12965049 gaattctgctctttacccaaacgtttctgctcattttcaaagtaaatgatcaaaatgctcctacgtgagttaactcacgctaatgtta 12965136  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 166
Target Start/End: Complemental strand, 19984754 - 19984702
Alignment:
Q  114 tgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgc 166  Q
    ||||| |||| ||| ||||||| |||||||||||||||||| |||||||||||    
T  19984754 tgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaactcacgc 19984702  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 22727661 - 22727735
Alignment:
Q  87 tgaatcctgctctttatccaaata-ttttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaac 160  Q
    |||||||||||||||| |||||||  |||||| ||| ||||| ||||||| | |||||||||| ||||| |||||    
T  22727661 tgaatcctgctctttacccaaatagatttgcttattcccaaagtaaatgacccaaatacccctacgtgagttaac 22727735  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 163
Target Start/End: Complemental strand, 38226272 - 38226219
Alignment:
Q  110 attttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactca 163  Q
    ||||||| |||||||||  ||||||| |||||||||||||||||| || |||||    
T  38226272 attttgcccatttccaatgtaaatgaccaaaatacccctgcgtgagtttactca 38226219  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 54208186 - 54208241
Alignment:
Q  94 tgctctttatccaaata-ttttgctcatttccaaaataaatgatcaaaatacccct 148  Q
    ||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||    
T  54208186 tgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccct 54208241  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 1826638 - 1826580
Alignment:
Q  87 tgaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatac 144  Q
    ||||| ||||||||||||||||| |||||||||||||  ||| ||||||||||||||||    
T  1826638 tgaattctgctctttatccaaatgattttgctcatttttaaagtaaatgatcaaaatac 1826580  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 7204033 - 7203968
Alignment:
Q  84 tgatgaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccct 148  Q
    |||||||| ||||| ||| ||||||| ||||||||| || ||||| ||||||||||||||||||||    
T  7204033 tgatgaattctgctatttttccaaatgattttgctcgttcccaaagtaaatgatcaaaatacccct 7203968  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 14153354 - 14153415
Alignment:
Q  88 gaatcctgctctttatccaaat-attttgctcatttccaaaataaatgatcaaaatacccct 148  Q
    |||| |||||| ||| |||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 14153415  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 5603214 - 5603152
Alignment:
Q  112 tttgctcatttccaaaataaatgatcaaaatacccctgcgtgaattaactcacgctaatgtta 174  Q
    ||||||||||| |||| |||||||||||| |  |||||| ||| ||||||||||||| |||||    
T  5603214 tttgctcattttcaaagtaaatgatcaaagtgtccctgcatgagttaactcacgctagtgtta 5603152  T

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