View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_94 (Length: 244)
Name: NF0841_low_94
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38554053 - 38554290
Alignment:
| Q |
1 |
aacaagtatacgcgattttgattaatttccatcgcattcatctaagtatcaatccctttcaccttcttctcaatttcatcaataattttcgtcacaattt |
100 |
Q |
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| T |
38554053 |
aacaagtatacgcgattttgattaatttccatcgcattcatctaagtatcaatccctttcaccttcttctatatttcatcaataattttcgtcacaattt |
38554152 |
T |
|
| Q |
101 |
tcgttctatc-gttacatagtagcttaatttggttttaacgcgagttcaatttggannnnnnngttgctcgtaacttgaatcacataaaaatagtcaaat |
199 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38554153 |
tcgttctatctgttacatagtagtttaatttggttttaacgcgagttcaatttggatttttttgttgctcgtaacttgaatcacataaaaatagtcaaat |
38554252 |
T |
|
| Q |
200 |
tagggtttggtgctcgttgttttactatgcctatgcta |
237 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||| |
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| T |
38554253 |
tagggtttggtgctcgttgttttacgatgcctgtgcta |
38554290 |
T |
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