View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0841_low_96 (Length: 243)
Name: NF0841_low_96
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4785253 - 4785109
Alignment:
| Q |
1 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
100 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4785253 |
tcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgg |
4785154 |
T |
|
| Q |
101 |
gtccaccatatcttcaattaccacaccttcattgtaacatgtttg |
145 |
Q |
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| T |
4785153 |
gtccaccatatcttcaattaccataccttcattgtaacatgtttg |
4785109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4817682 - 4817538
Alignment:
| Q |
1 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
100 |
Q |
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|||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4817682 |
tcatcgacattcgttgatttccatcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgg |
4817583 |
T |
|
| Q |
101 |
gtccaccatatcttcaattaccacaccttcattgtaacatgtttg |
145 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4817582 |
gtccaccatatcttcaattaccataccttcattgtaacatgtttg |
4817538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 4862587 - 4862731
Alignment:
| Q |
1 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4862587 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
4862686 |
T |
|
| Q |
101 |
gtccaccatatcttcaattaccacaccttcattgtaacatgtttg |
145 |
Q |
| |
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| T |
4862687 |
atctaccatctcttcaattatgacaccttcattgtaacatttttg |
4862731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4713484 - 4713345
Alignment:
| Q |
1 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |
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|
| T |
4713484 |
tcatagacattcgttgatttccatcaccatgcaaacaactcaacaccatttcacaataacatttcaaacactcacttgttatagagtcctttatgaacgg |
4713385 |
T |
|
| Q |
101 |
gtccaccatatcttcaattaccacaccttcattgtaacat |
140 |
Q |
| |
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||||||||| ||||||| || ||||||||||||||||||| |
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| T |
4713384 |
gtccaccatctcttcaactatcacaccttcattgtaacat |
4713345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4854854 - 4854715
Alignment:
| Q |
1 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
100 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| || |||||||| || |
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|
| T |
4854854 |
tcatagacatccgttgatttccatcaccatgcaaacaactcaacaccatttgacaataaaatttcaaacactcacttgttatagagtcctttatgaatgg |
4854755 |
T |
|
| Q |
101 |
gtccaccatatcttcaattaccacaccttcattgtaacat |
140 |
Q |
| |
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||||||||| ||||||| || ||| ||||||||||||||| |
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| T |
4854754 |
gtccaccatctcttcaactatcactccttcattgtaacat |
4854715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 4698608 - 4698464
Alignment:
| Q |
1 |
tcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacgg |
100 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| || |||||||| ||||||| ||| | ||| ||| ||||||||||| ||||||||||| |
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| T |
4698608 |
tcatcgacatccgttgatttccatcatcatgcaaacaactcaacaccatttggcaataactttttagacattcagccgttatagaatcctttatgaacgg |
4698509 |
T |
|
| Q |
101 |
gtccaccatatcttcaattaccacaccttcattgtaacatgtttg |
145 |
Q |
| |
|
||||||||| ||||| || | ||||||||||||||||||| |||| |
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| T |
4698508 |
gtccaccatctcttcgatgatcacaccttcattgtaacatctttg |
4698464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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