View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0841_low_98 (Length: 239)
Name: NF0841_low_98
Description: NF0841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0841_low_98 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 15173091 - 15172852
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
15173091 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctcaaccttgaaattaccaacaaaccat |
15172992 |
T |
|
| Q |
109 |
ataagaagattgctaaggnnnnnnngattgtaacatacaactattgtaagaaaaaattatgcttttggtatcgctttcttgctggcgcagt--------- |
199 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
15172991 |
ataagaagattgctaaggaaaaaaagattgtaacatacaactattgtgagaaaaaattatgcttttagtatcgctttcttgctgacgcagtcaaaatatg |
15172892 |
T |
|
| Q |
200 |
caaaatatgcaaaatcgacagtgaagtattttaaatgcat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172891 |
caaaatatgcaaaatcgacagtgaagtattttaaatgcat |
15172852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 15168353 - 15168259
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
15168353 |
cttttcatacatagaggacgcaggcaa---------cacaccatgcaaattctcgatcttttctatgatatgctcaaccttgaaattatcaacaaaccat |
15168263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 8493001 - 8493154
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
||||||||||| |||| | | ||| |||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||||| |||| ||| || |
|
|
| T |
8493001 |
cttttcatacaaagagaatgtaggtgaaattttcaacaaaccgtgcaaattctcaatctcttttatgatatgctcaaccttgaaattaccaaaaaatgat |
8493100 |
T |
|
| Q |
109 |
ataagaagattgctaaggnnnnnnngattgtaacatacaactattgtaagaaaaa |
163 |
Q |
| |
|
||||||| ||| |||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
8493101 |
ataagaaaatttctaa-gaaaaagaaattgtaacatacaactattgtaaaaaaaa |
8493154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 8519574 - 8519727
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
||||||||||| |||| | | ||| |||||| ||||| ||| |||||||||||||||| |||||||||||||| |||||||||||| |||| ||| || |
|
|
| T |
8519574 |
cttttcatacaaagagaatgtaggtgaaattttcaacagaccgtgcaaattctcaatctcttttatgatatgctcaaccttgaaattaccaaaaaatgat |
8519673 |
T |
|
| Q |
109 |
ataagaagattgctaaggnnnnnnngattgtaacatacaactattgtaagaaaaa |
163 |
Q |
| |
|
||||||| ||| |||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
8519674 |
ataagaaaatttctaa-gaaaaagaaattgtaacatacaactattgtaaaaaaaa |
8519727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 1523291 - 1523216
Alignment:
| Q |
50 |
catgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccatataagaagattgctaag |
125 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| ||||||||| ||| ||||| |
|
|
| T |
1523291 |
catgcaaattctcaatctcttttatgagatgctcaaccttgaaattaccaacaaacgatataagaaaatttctaag |
1523216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 55809497 - 55809590
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||||||||||||||| |||||| |||||||||| | |||||||||||| ||||| ||||| |
|
|
| T |
55809497 |
cttttcatacatagaggaagcatgcaaaatttc------accatgcaaattctccatctttcttatgatatgatcaaccttgaaattagcaacataccat |
55809590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 55806173 - 55806266
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||| |||||||||| | |||||| ||||| ||||| ||||| |
|
|
| T |
55806173 |
cttttcatacatagaggaagcaggcaaaattt------caccagtcaaattctccatctttcttatgatatgatcaaccttaaaattagcaacataccat |
55806266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 29709472 - 29709379
Alignment:
| Q |
9 |
cttttcatacatagaggacgcaggcaaaatttccaacacaccatgcaaattctcaatcttttttatgatatgctaaaccttgaaattgccaacaaaccat |
108 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||||||||||| |||||| |||||||||| | ||||||| |||| ||||| ||||| |
|
|
| T |
29709472 |
cttttcatacatagaggaagcaggcaaaatatc------accatgcaaattctccatctttgttatgatatgatcaaccttggaattagcaacataccat |
29709379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1079 times since January 2019
Visitors: 6137