View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0842_high_1 (Length: 531)
Name: NF0842_high_1
Description: NF0842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0842_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 44924129 - 44923660
Alignment:
| Q |
1 |
cctgataaaaacaactgtttgtgtattgtttattctagtatcctgggactgttggtagaaactcaaatccggctcaagttccttccttaatataaaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44924129 |
cctgataaaaacaactgtttgtgtgttgtttattctagtatcctgggactgttggtagaaactcaaatccggcacaagttccttccttaatataaaaata |
44924030 |
T |
|
| Q |
101 |
ttagttcaatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccatctgtttgtttaccacaactcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44924029 |
ttagttcaatcaaatctgtggtgtatgtttgtttatcctggaaatgctcatgttcatgtgccacaaaacacaagtccatctgtttgtttaccacaactcc |
44923930 |
T |
|
| Q |
201 |
ctaaggtgtctgttagaaaggacataagtttcattttcttgctggtagttgcaacatagaaaatcacatcttttaatccaccttctttgttcaaagaaag |
300 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44923929 |
ctcaggtgtctgttaga--------------gattttcttgctggtagttgcaacatagaaaat--------------caccttctttgttcaaagaaag |
44923858 |
T |
|
| Q |
301 |
ggaatatccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaaactgatgaatgcgtccttgaa |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44923857 |
ggaattaccctctggatccttacctaagtagcacgcataccttgatcaaggtggttacgctactctccttgttcatcaaactgatgaatgcgtccttgaa |
44923758 |
T |
|
| Q |
401 |
attgttgcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacacccataagtactggctttgaatctctgctcctc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
44923757 |
attgttgcacttttgtgtgcgtccaatctgtcaaggttcaaggttggttgtcaccccatgataacaccc-taagtactggcttcgaatctcagctcctc |
44923660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 910 times since January 2019
Visitors: 6134