View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0842_high_2 (Length: 332)
Name: NF0842_high_2
Description: NF0842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0842_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 44924010 - 44924299
Alignment:
| Q |
11 |
cacagatttgattgaactaatatttttatattaaggaaggaacttgagccggatttgagtttctaccaacagtcccaggatactagaataaacaatacac |
110 |
Q |
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| T |
44924010 |
cacagatttgattgaactaatatttttatattaaggaaggaacttgtgccggatttgagtttctaccaacagtcccaggatactagaataaacaacacac |
44924109 |
T |
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| Q |
111 |
aaacagttgtttttatcaggaggatgaaacgaaaacaataacagataattcaaaaccaaccttaatttgtgattaaaatgtcaggaggagtacaaatcac |
210 |
Q |
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| T |
44924110 |
aaacagttgtttttatcaggaggatgaaaagaaaacaataacagataattcaaaaccaaccttaatttgtgattaaaatgtcaggaggagtacaaatcac |
44924209 |
T |
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| Q |
211 |
agactatatcatccaactaactagtataaagatcaagcagatcattaatgcaagtttcacaattataagttctcaaaaggcacaggaaag |
300 |
Q |
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| T |
44924210 |
agactatatcatccaactaactagtataaagatcaagcagatcattaatgcaagtttcacagttataagttctcaaaaggcacaggaaag |
44924299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 292
Target Start/End: Complemental strand, 29514984 - 29514867
Alignment:
| Q |
175 |
atttgtgattaaaatgtcaggaggagtacaaatcacagactatatcatccaactaactagtataaagatcaagcagatcattaatgcaagtttcacaatt |
274 |
Q |
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||||||| ||||||||||| | || |||||||||||| |||||||||| ||||||||| |||| || | || || || | ||| ||||||||| |||| |
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| T |
29514984 |
atttgtgtttaaaatgtcaagtggtgtacaaatcacaaactatatcattcaactaacttgtatgaacaataaaaaggtcttcaatacaagtttcagaatt |
29514885 |
T |
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| Q |
275 |
ataagttctcaaaaggca |
292 |
Q |
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| T |
29514884 |
acaagttctcaaaaggca |
29514867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 29515124 - 29515060
Alignment:
| Q |
101 |
aacaatacacaaacagttgtttttatcaggaggatgaaacgaaaacaataacagataattcaaaa |
165 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| ||| |||| |||||||||| |
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| T |
29515124 |
aacaacacacaaacagttgtttttatcaggaggatgaaaagaatacagcaacaagtaattcaaaa |
29515060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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