View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0842_low_2 (Length: 379)
Name: NF0842_low_2
Description: NF0842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0842_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 373
Target Start/End: Complemental strand, 30818354 - 30818000
Alignment:
| Q |
19 |
atgagaggaagtttctatggttcatgggatttgaatgctactaatgatgcaaatttaggttatatgaatgatacttcttattactctgtgacttgggaga |
118 |
Q |
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| T |
30818354 |
atgagaggaattttctatggttcatgggatttgaatgctactaatgatgcaaatttaggttatatgaatgatacttcttattactctgtgacttgggaga |
30818255 |
T |
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| Q |
119 |
aggaagttggtaatggaagttggatttttcaccatgtgttgaagacttcttctaaatatccttggttaatgctttatcttagatcagatgctactacagg |
218 |
Q |
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| T |
30818254 |
aggaagttggtaatggaagttggatttttcaccatgtgttgaagacttcttctaaatatccttggttaatgctttatcttagatcagatgctactacagg |
30818155 |
T |
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| Q |
219 |
attctctggtggttaccattatgaaactagaggcatgacaaaaattgtaccaaagtcaccacattttaaggtaaggttcacacttgatatcaagaaagga |
318 |
Q |
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| T |
30818154 |
attctctggtggttaccattatgaaactagaggcatgacaaaaattgtaccaaagtcaccacattttaaggtaagattcacacttgatatcaagaaagga |
30818055 |
T |
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| Q |
319 |
gggggtccaaggagccaattctacctcatggacatgggaagttgttggaagaaca |
373 |
Q |
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| T |
30818054 |
gggggtccaaggagccaattctacctcatggacatgggaagttgttggaagaaca |
30818000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 373
Target Start/End: Original strand, 38574641 - 38574742
Alignment:
| Q |
272 |
agtcaccacattttaaggtaaggttcacacttgatatcaagaaaggagg-gggtccaaggagccaattctacctcatggacatgggaagttgttggaaga |
370 |
Q |
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| T |
38574641 |
agtcaccaaattttaaggtgaggttaaccttagatgtcaagaaaggaggaggatccaa-gagccaattctaccttctagacatgggaagttgttggaaga |
38574739 |
T |
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| Q |
371 |
aca |
373 |
Q |
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||| |
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| T |
38574740 |
aca |
38574742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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