View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0842_low_7 (Length: 268)

Name: NF0842_low_7
Description: NF0842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0842_low_7
NF0842_low_7
[»] chr6 (2 HSPs)
chr6 (8-230)||(13409770-13409992)
chr6 (70-110)||(10554607-10554647)
[»] chr1 (1 HSPs)
chr1 (22-127)||(44331812-44331917)
[»] chr3 (1 HSPs)
chr3 (21-126)||(43490101-43490206)
[»] chr7 (2 HSPs)
chr7 (23-122)||(6583050-6583149)
chr7 (23-122)||(6568891-6568990)
[»] chr8 (1 HSPs)
chr8 (23-126)||(38653179-38653282)
[»] chr4 (3 HSPs)
chr4 (79-125)||(33750433-33750479)
chr4 (88-122)||(33718963-33718997)
chr4 (88-125)||(33720979-33721016)


Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 13409992 - 13409770
Alignment:
Q  8 aagccctagctgttgcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtct 107  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13409992 aagccctagctgcagcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtct 13409893  T
Q  108 ttgtctcactcctctgtatcgtctcctttgctcgccggagtcttcgaatgacgcggctgacgctgccgaggtggctatggtagtacttgttcgagcttct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13409892 ttgtctcactcctctgtatcgtctcctttgctcgccggagtcttcgaatgacgcggctgacgctgccgaggtggctatggtagtacttgttcgagcttct 13409793  T
Q  208 tcggtcactgaaattgtataaag 230  Q
    |||||||||||||| ||||||||    
T  13409792 tcggtcactgaaatcgtataaag 13409770  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 10554647 - 10554607
Alignment:
Q  70 ggatctcttatttctgctgcccattttccccatggtctttg 110  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  10554647 ggatctcttatttcagctgcccatttcccccaaggtctttg 10554607  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 44331812 - 44331917
Alignment:
Q  22 gcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctc 121  Q
    |||||||| || || |||||||| ||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||| ||||| |||||||    
T  44331812 gcttctgcagtttcaaatgttccaagccatactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctgtcttactcctc 44331911  T
Q  122 tgtatc 127  Q
    ||||||    
T  44331912 tgtatc 44331917  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 43490101 - 43490206
Alignment:
Q  21 tgcttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcct 120  Q
    |||||| ||||| || |||||||||| ||||||||||  |||||||  |||||||||||| |||||||||||||||||||||||||| ||||| ||||||    
T  43490101 tgcttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctctgtcttactcct 43490200  T
Q  121 ctgtat 126  Q
    ||||||    
T  43490201 ctgtat 43490206  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 6583149 - 6583050
Alignment:
Q  23 cttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctct 122  Q
    |||| |||||||| |||||||||| ||| |||||   |||||| | ||| || | |||||| ||||||||||||||||||||||||||||||||||||||    
T  6583149 cttcagctgtgtcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctct 6583050  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 6568990 - 6568891
Alignment:
Q  23 cttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctct 122  Q
    |||| ||||| || |||||||||| ||| |||||   |||||| | ||| || | |||||| ||||||||||||||||||||||| ||||||||||||||    
T  6568990 cttcagctgtatcaaatgttcctaaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctct 6568891  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 38653179 - 38653282
Alignment:
Q  23 cttctgctgtgtcgaatgttcctagccatactctttgtgctttgtgtggatctcttatttctgctgcccattttccccatggtctttgtctcactcctct 122  Q
    |||| ||||| || ||||| |||| ||||||||||   ||||||   ||||||||||| ||||||||||||||||||||||| || ||||| ||||||||    
T  38653179 cttcagctgtttcaaatgtacctaaccatactcttgtagctttgaaaggatctcttatctctgctgcccattttccccatggcctctgtcttactcctct 38653278  T
Q  123 gtat 126  Q
    ||||    
T  38653279 gtat 38653282  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 33750479 - 33750433
Alignment:
Q  79 atttctgctgcccattttccccatggtctttgtctcactcctctgta 125  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||    
T  33750479 atttcagcagcccatttaccccatggtctttgtctcactcctctgta 33750433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 33718997 - 33718963
Alignment:
Q  88 gcccattttccccatggtctttgtctcactcctct 122  Q
    |||||||||||||||||||| ||||||||||||||    
T  33718997 gcccattttccccatggtctctgtctcactcctct 33718963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 33721016 - 33720979
Alignment:
Q  88 gcccattttccccatggtctttgtctcactcctctgta 125  Q
    |||||||||||||||||||| || ||||||||||||||    
T  33721016 gcccattttccccatggtctctgcctcactcctctgta 33720979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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