View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_high_3 (Length: 408)
Name: NF0843_high_3
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 176 - 408
Target Start/End: Original strand, 43269401 - 43269638
Alignment:
| Q |
176 |
agatgtctttgtttgataacattatggttgtctccttttcttgtattttccatttcatcaaaataatctcctgcctagactttcatatttcgtccttcaa |
275 |
Q |
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| T |
43269401 |
agatgtctctgtttgataacattatggttgtctccttttcttgtattttccatttcatcaaaataatctcctgcctagactttcataattcgtccttcaa |
43269500 |
T |
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| Q |
276 |
tcagaattcttttgaaaagtcaaagtccacagatctctat-----ggtaagtatcaggattcaagcctggctgcgtgaaagnnnnnnnnnnttaatagtg |
370 |
Q |
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| T |
43269501 |
tcagaattcttttgaaaagtcaaagtccacagatctctatggtaaggtaagtatcaggattcaagcctggctgcgtgaaggaaaaaaaaaattaatagtg |
43269600 |
T |
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| Q |
371 |
gggagttgaacaataattttattttattttgcatggta |
408 |
Q |
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| T |
43269601 |
gggagttgaacaataattttattttattttgcatggta |
43269638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 43269335 - 43269374
Alignment:
| Q |
76 |
acaagtacctttgtcatgaccacattcacaaagtcagaag |
115 |
Q |
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| T |
43269335 |
acaagtacctttgtcatgaccacattcacgaagtcagaag |
43269374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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