View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0843_high_5 (Length: 355)

Name: NF0843_high_5
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0843_high_5
NF0843_high_5
[»] chr3 (3 HSPs)
chr3 (14-326)||(2145076-2145388)
chr3 (37-161)||(48032261-48032385)
chr3 (54-108)||(12699558-12699612)
[»] chr7 (1 HSPs)
chr7 (27-326)||(28301288-28301587)
[»] chr6 (2 HSPs)
chr6 (27-326)||(10144016-10144315)
chr6 (15-124)||(30898985-30899094)
[»] chr1 (2 HSPs)
chr1 (23-326)||(29465983-29466286)
chr1 (27-245)||(48562506-48562722)
[»] scaffold0075 (1 HSPs)
scaffold0075 (27-322)||(12644-12939)
[»] chr2 (3 HSPs)
chr2 (27-322)||(12433386-12433681)
chr2 (33-177)||(13016160-13016294)
chr2 (122-230)||(1095468-1095576)
[»] chr8 (3 HSPs)
chr8 (14-245)||(44605284-44605519)
chr8 (38-245)||(20307073-20307273)
chr8 (38-245)||(21093706-21093906)
[»] chr4 (2 HSPs)
chr4 (23-177)||(34495003-34495157)
chr4 (32-120)||(4699738-4699826)
[»] scaffold0006 (1 HSPs)
scaffold0006 (33-177)||(281101-281245)
[»] chr5 (2 HSPs)
chr5 (29-93)||(41483534-41483598)
chr5 (17-119)||(32025901-32026003)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 2145388 - 2145076
Alignment:
Q  14 tgagatgaaatgggatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcatt 113  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2145388 tgagatggaatgggatggaatggaatggaataaattactgttccattgtttggattgtcattaaaaggatggaatggaatggaacctaatggcattcatt 2145289  T
Q  114 ccatcatattccattacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattac 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2145288 ccatcatattccattacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttattgaatgattaaattac 2145189  T
Q  214 aaatacaacctcttcattaaatttcttcttcttcagctttataactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgc 313  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  2145188 aaatacaacctcttcattaaatttcttcttcttcagctttacaactttgttcatcttcggttcttcaacgtaccttacgtgtggctatcttttaatttgc 2145089  T
Q  314 tttcactaggaac 326  Q
    |||||||||||||    
T  2145088 tttcactaggaac 2145076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 48032385 - 48032261
Alignment:
Q  37 aatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattccattacttactt 136  Q
    ||||||||||||||   || ||||||||| ||  ||||||||||||||| |||||||  ||| ||||  ||| ||||||||||| |||||  ||||||||    
T  48032385 aatggaataaattaagatttcattgtttgaataatcattaaaaggatgggatggaataaaactcaataacatgcattccatcatgttccaccacttactt 48032286  T
Q  137 acattttggctaccctccaatttgg 161  Q
       |||||  ||||||| |||||||    
T  48032285 tggttttgcttaccctctaatttgg 48032261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 12699612 - 12699558
Alignment:
Q  54 ttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcat 108  Q
    ||||||||||| ||| |||||||||||||||  ||||||||||||  ||||||||    
T  12699612 ttccattgtttagatagtcattaaaaggatgcgatggaatggaacttaatggcat 12699558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 27 - 326
Target Start/End: Complemental strand, 28301587 - 28301288
Alignment:
Q  27 gatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattcca 126  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28301587 gatggaatgggatggaataaattactgttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattcca 28301488  T
Q  127 ttacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacctct 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28301487 ttacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttattgaatgattaaattacaaatacaacctct 28301388  T
Q  227 tcattaaatttcttcttcttcagctttataactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactaggaac 326  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28301387 tcattaaatttcttcttcttcagctttacaactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactaggaac 28301288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 27 - 326
Target Start/End: Original strand, 10144016 - 10144315
Alignment:
Q  27 gatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattcca 126  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  10144016 gatggaatgggatggaataaattccagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatgacattcattctatcatattcca 10144115  T
Q  127 ttacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacctct 226  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10144116 ttacttacttacattttggttaccctccaatttgggtggaatggaatggaaccactaataactttatttattgaatgattaaattacaaatacaacctct 10144215  T
Q  227 tcattaaatttcttcttcttcagctttataactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactaggaac 326  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10144216 tcattaaatttcttcttcttcagctttacaactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactaggaac 10144315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 30898985 - 30899094
Alignment:
Q  15 gagatgaaatgggatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattc 114  Q
    ||||| |||||||||  ||||||||||||||| |||  ||||||||||||| ||  | |||||||| ||||||| |||| | |  |||||| || |||||    
T  30898985 gagatcaaatgggataaaatggaatggaataagttagtgttccattgtttgcatacttattaaaagaatggaatagaatagtattcaatggtatgcattc 30899084  T
Q  115 catcatattc 124  Q
    ||||| ||||    
T  30899085 catcacattc 30899094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 23 - 326
Target Start/End: Complemental strand, 29466286 - 29465983
Alignment:
Q  23 atgggatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatat 122  Q
    |||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29466286 atggaatgggatggaatggaataaattattgttccattgtttggattgtcattaaaagaatggaatggaatggaacccaatggcattcattccatcatat 29466187  T
Q  123 tccattacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29466186 tccattacttacttacattttggctaccctccaatttgggtcgaatggaatggaaccactaataactttatttattgaatgattaaattacaaatacaac 29466087  T
Q  223 ctcttcattaaatttcttcttcttcagctttataactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactag 322  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29466086 ctcttcattaaatttcttcttcttcagctttacaactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactag 29465987  T
Q  323 gaac 326  Q
    ||||    
T  29465986 gaac 29465983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 48562506 - 48562722
Alignment:
Q  27 gatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattcca 126  Q
    |||||||||||||| ||||||| |  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  48562506 gatggaatggaatgaaataaatcaatgttccattgtttggattgttattaaaaggatagaatggaatggaacccaatgatattcattccatcatattcca 48562605  T
Q  127 ttacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacc--- 223  Q
    ||||||||||||||||||| | |||||||| || ||      |||||||||||||| |  ||||||||| |  ||||||||||||||||||||||||       
T  48562606 ttacttacttacattttggttcccctccaagttagg-----cggaatggaaccactgactactttatttgttcaatgattaaattacaaatacaacctcg 48562700  T
Q  224 tcttcattaaatttcttcttct 245  Q
    ||||||||| ||||||||||||    
T  48562701 tcttcattatatttcttcttct 48562722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 12939 - 12644
Alignment:
Q  27 gatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattcca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12939 gatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggtattcattccatcatattcca 12840  T
Q  127 ttacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacctct 226  Q
    ||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12839 ttacttaattacattttggttaccctttaatttgggtggaatggaatggaaccactaataactttatttattgaatgattaaattacaaatacaacctct 12740  T
Q  227 tcattaaatttcttcttcttcagctttataactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactag 322  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12739 tcattaaatttctttttcttcagctttacaactttgttcatcttcggttcttcaacgtatcttatgcgtggctatcttttaatttgctttcactag 12644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 12433681 - 12433386
Alignment:
Q  27 gatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattcca 126  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12433681 gatggaatgggatggaataaattacagttccattgcttggattgtcattaaaaggatggaatggaatggaacccaatggtattcattccatcatattcca 12433582  T
Q  127 ttacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacctct 226  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  12433581 ttacttacttacattctggttacccttcaatttgggtggaatggaatggaaccactaataactatatttattgaatgattaaattacaaatacaacctct 12433482  T
Q  227 tcattaaatttcttcttcttcagctttataactttgttcatcttcggttcttcaacgtaccttatgcgtggctatcttttaatttgctttcactag 322  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12433481 tcattaaatttcttcttcttcagctttacaactttgttcatcttcggttcttcaacgtaccttacgcgtggctatcttttaatttgctttcactag 12433386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 13016160 - 13016294
Alignment:
Q  33 atggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattccattactt 132  Q
    |||||||||||||||||| | || |||||||||||| || ||||||||||||| |||||||||||| |||||  ||           |||||||| ||||    
T  13016160 atggaatggaataaattaaaatttcattgtttggatagtaattaaaaggatgggatggaatggaactcaatgaaat----------gtattccatcactt 13016249  T
Q  133 acttacattttggctaccctccaatttgggtggaatggaatggaa 177  Q
    |||  |||||||  ||||||||||||||| |||||||||||||||    
T  13016250 actctcattttgcttaccctccaatttggatggaatggaatggaa 13016294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 1095576 - 1095468
Alignment:
Q  122 ttccattacttacttacattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaa 221  Q
    |||||||| |||| |||||||||| | |||| ||||||||| | |||||||||||| | ||||| ||||||||| |    | ||||||||||||||| ||    
T  1095576 ttccattagttacatacattttggttgcccttcaatttgggcgaaatggaatggaatcgctaattactttatttgtacggttattaaattacaaatataa 1095477  T
Q  222 cctcttcat 230  Q
    |||| ||||    
T  1095476 cctcatcat 1095468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 44605284 - 44605519
Alignment:
Q  14 tgagatgaaatgggatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcatt 113  Q
    |||||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  44605284 tgagatgagatggtatggaatggaatggaataaattaatgttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggtatccatt 44605383  T
Q  114 ccatcatattccattacttacttacattttggctaccctccaatttgggtggaatggaatggaaccac-taataactttatttatggaatgattaaatta 212  Q
     ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| || ||  ||||||| |  ||||| |||||||    
T  44605384 tcatcatattccattacttacttacattttggttcccctccaatttgggtgaaatggaatggaaccacttattatttttatttgtccaatgactaaatta 44605483  T
Q  213 caaatacaacc---tcttcattaaatttcttcttct 245  Q
    |||||||||||   ||||||||| ||||||||||||    
T  44605484 caaatacaacctcatcttcattacatttcttcttct 44605519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 20307073 - 20307273
Alignment:
Q  38 atggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattccattacttactta 137  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||     |||||||| |||| | ||  ||| ||||||||| ||||||||||| |    
T  20307073 atggaataaattaatgttccattgtttggattgtcgttaaaaggatgg-----aatggaactcaattgtatctatttcatcatatttcattacttactca 20307167  T
Q  138 cattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacc---tcttcattaaa 234  Q
    |||||||| | |||||||||||     ||||| |||||||||||| || | ||||||| |  ||||| ||||||||||||||||||   ||||||||| |    
T  20307168 cattttggttcccctccaattt-----gaatgaaatggaaccacttattattttatttgtccaatgactaaattacaaatacaacctcatcttcattaca 20307262  T
Q  235 tttcttcttct 245  Q
    |||||||||||    
T  20307263 tttcttcttct 20307273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 245
Target Start/End: Original strand, 21093706 - 21093906
Alignment:
Q  38 atggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattccattacttactta 137  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||     |||||||| |||| | ||  ||| ||||||||| ||||||||||| |    
T  21093706 atggaataaattaatgttccattgtttggattgtcgttaaaaggatgg-----aatggaactcaattgtatctatttcatcatatttcattacttactca 21093800  T
Q  138 cattttggctaccctccaatttgggtggaatggaatggaaccactaataactttatttatggaatgattaaattacaaatacaacc---tcttcattaaa 234  Q
    |||||||| | |||||||||||     ||||| |||||||||||| || | ||||||| |  ||||| ||||||||||||||||||   ||||||||| |    
T  21093801 cattttggttcccctccaattt-----gaatgaaatggaaccacttattattttatttgtccaatgactaaattacaaatacaacctcatcttcattaca 21093895  T
Q  235 tttcttcttct 245  Q
    |||||||||||    
T  21093896 tttcttcttct 21093906  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 34495157 - 34495003
Alignment:
Q  23 atgggatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatat 122  Q
    |||| |||| |||||||||||||||||| | ||||||||||||||| || ||||||||||||| ||| |||||||| |||||| ||  ||||||||| ||    
T  34495157 atggaatgggatggaatggaataaattaaaattccattgtttggatagtaattaaaaggatgggatgaaatggaactcaatggaatgtattccatcacat 34495058  T
Q  123 tccattacttacttacattttggctaccctccaatttgggtggaatggaatggaa 177  Q
    ||||| |||||||  ||| |||  ||||||||||||||| |||||||||||||||    
T  34495057 tccatcacttactctcatattgcttaccctccaatttggatggaatggaatggaa 34495003  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 4699826 - 4699738
Alignment:
Q  32 aatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcat 120  Q
    |||| ||||||||||||||   ||||||||||||| |  |||||||||||||  |||||| |||||| |||||| ||  ||||||||||    
T  4699826 aatgaaatggaataaattaagattccattgtttggttattcattaaaaggataaaatggagtggaacacaatggaatatattccatcat 4699738  T

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Target: scaffold0006 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 177
Target Start/End: Original strand, 281101 - 281245
Alignment:
Q  33 atggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattccatcatattccattactt 132  Q
    |||||||||||||||||| | ||| ||||||||||| || |||||||| |||  |||||||||||| |||||| ||  ||||||||| ||||||| ||||    
T  281101 atggaatggaataaattaaaattctattgtttggatagtaattaaaagaatgagatggaatggaactcaatggaatgtattccatcacattccatcactt 281200  T
Q  133 acttacattttggctaccctccaatttgggtggaatggaatggaa 177  Q
    |||  ||| |||  ||||||||||||||| |||||||||||||||    
T  281201 actctcatcttgcttaccctccaatttggatggaatggaatggaa 281245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 41483534 - 41483598
Alignment:
Q  29 tggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaat 93  Q
    |||||||||||||||||||||| | ||| |||||||||||  |||||||||||||||||||||||    
T  41483534 tggaatggaatggaataaattaaaattctattgtttggatattcattaaaaggatggaatggaat 41483598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 32025901 - 32026003
Alignment:
Q  17 gatgaaatgggatggaatggaatggaataaattacagttccattgtttggattgtcattaaaaggatggaatggaatggaacccaatggcattcattcca 116  Q
    |||| ||||| |||||||| ||| |||||||||| | ||||||||||||||| |||||||||||  || | ||||||||||| |||||| ||  ||||||    
T  32025901 gatggaatggaatggaatgaaattgaataaattaaaattccattgtttggatagtcattaaaagagtgtactggaatggaactcaatggtatgtattcca 32026000  T
Q  117 tca 119  Q
    |||    
T  32026001 tca 32026003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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