View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_high_8 (Length: 350)
Name: NF0843_high_8
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 2289371 - 2289647
Alignment:
| Q |
16 |
aaaagttaagggcactaagtattgataaagtgcatataagaacctaactaccaagctttgcnnnnnnnnnn----gaagcaccaagtattaactagtgat |
111 |
Q |
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| T |
2289371 |
aaaagttaagggcacaaagtattgataaagtgcatataaaaagcttactaccaagctttgcaacaaaaaaaaaaagaagcactaagtattaactagtgat |
2289470 |
T |
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| Q |
112 |
actaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaattgtttgctattcatcacttg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2289471 |
actaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaactgtttgctattcatcacttg |
2289570 |
T |
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| Q |
212 |
ctgaaatttcattcttaccatgaataatatcttcaacatt---actcactttctcagcacctgcgctttcctctgcg |
285 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
2289571 |
ctgaaatttcattcttaccattaataatatcttcaacattgagactcactttctcagcaccttcgctttcctctgcg |
2289647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 10397676 - 10397612
Alignment:
| Q |
282 |
tgcgaggtctgttgtttagattttatttcctggttattgacaagtaacaactgtatagtagtagt |
346 |
Q |
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| T |
10397676 |
tgcgaggtctgttgtttagattttatttcctggttattgacaagtaacaactgtatagtagtagt |
10397612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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