View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_low_2 (Length: 427)
Name: NF0843_low_2
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 104 - 417
Target Start/End: Complemental strand, 25585937 - 25585622
Alignment:
| Q |
104 |
gctaccattagttagttgaataaatacctaagaatttcttcggctgtg--aaatatttctcaattattatgagaccagctgttttttatgtacatcgatg |
201 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
25585937 |
gctagcattagttagttgaataaatacctaagagtttcttcagctgtgtgaaatatttctcaattattatgagaccagctgttttttatgtacattgcag |
25585838 |
T |
|
| Q |
202 |
acaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatggagtagataattgacggctctctcagtaataacct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25585837 |
acaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatggagtagataattgacggctctctcagtaataacct |
25585738 |
T |
|
| Q |
302 |
caccgggaatcaatacaggtatgcctggaggatatggacaaataagctcccccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttgc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25585737 |
caccgggaatcaatacaggtatgcctggaggatatggacaaataagctcccccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttgc |
25585638 |
T |
|
| Q |
402 |
aaaaaatgcatctctg |
417 |
Q |
| |
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|||||||||||||||| |
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| T |
25585637 |
aaaaaatgcatctctg |
25585622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 201 - 416
Target Start/End: Complemental strand, 25590721 - 25590506
Alignment:
| Q |
201 |
gacaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatggagtagataattgacggctctctcagtaataacc |
300 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||| |
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| T |
25590721 |
gacaactatcgaggaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacatggagtagataatcgactgctttctcagtaataacc |
25590622 |
T |
|
| Q |
301 |
tcaccgggaatcaatacaggtatgcctggaggatatggacaaataagctcccccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttg |
400 |
Q |
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|| || || |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || | | ||||||||||||| |||| |
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| T |
25590621 |
tcgcctgggatcaataccggtatgcctggagggtatggacatataagctcccccgaaaccttaccaatgctctctttcaccattacttttcttttacttg |
25590522 |
T |
|
| Q |
401 |
caaaaaatgcatctct |
416 |
Q |
| |
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|||| ||||||||||| |
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| T |
25590521 |
caaagaatgcatctct |
25590506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 201 - 416
Target Start/End: Complemental strand, 25600373 - 25600158
Alignment:
| Q |
201 |
gacaactatagaagaaagtaagggatcagatgctccactaatatcagcacctttgcttcttacatggagtagataattgacggctctctcagtaataacc |
300 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||| |
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| T |
25600373 |
gacaactatcgaagaaagtaagggatcagatgctccactaatatcagcaccttcacttcttacatggagtagataatcgactgctttctcagtaataacc |
25600274 |
T |
|
| Q |
301 |
tcaccgggaatcaatacaggtatgcctggaggatatggacaaataagctcccccgaaaccttaccaatgctctcctttatcgttacttttcttttgcttg |
400 |
Q |
| |
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|| || || |||||||| |||||||||||||| |||||||| | |||||||||||||||||||||||||||||| || | | ||||||||||||| |||| |
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| T |
25600273 |
tcgcctgggatcaataccggtatgcctggagggtatggacatacaagctcccccgaaaccttaccaatgctctctttcaccattacttttcttttacttg |
25600174 |
T |
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| Q |
401 |
caaaaaatgcatctct |
416 |
Q |
| |
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|||| ||||||||||| |
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|
| T |
25600173 |
caaagaatgcatctct |
25600158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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