View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_low_20 (Length: 318)
Name: NF0843_low_20
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 233
Target Start/End: Original strand, 8134991 - 8135128
Alignment:
| Q |
101 |
aggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgcnnnnnnnn-----cttaaattattagaagtgtatatacgtatttat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
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| T |
8134991 |
aggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgctttttttttttctcttaaattattagaagtgtatatgcgtatgtat |
8135090 |
T |
|
| Q |
196 |
caatgttgtgtctgatatatgtgtcgacgtgtcctatg |
233 |
Q |
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||||||||||||||||||| |||||||||||||||||| |
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| T |
8135091 |
caatgttgtgtctgatatacgtgtcgacgtgtcctatg |
8135128 |
T |
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