View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_low_22 (Length: 300)
Name: NF0843_low_22
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 51579085 - 51579272
Alignment:
| Q |
40 |
gtatttttagtcaagaagcaaatgaaaaaacacctaagaaaatgcagctaagttttgtccatctaaaaaattacgtacagtaggcacggtactggtcacg |
139 |
Q |
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| T |
51579085 |
gtatttttagtcaagaagcaaatgaaaaaacacctaagaaaatgcagctaagttttgtccatctaaaaaattacgtacagtaggcccggtactggtcacg |
51579184 |
T |
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| Q |
140 |
catccaatgccggctgccttgaatccagcacgcacaccttctgcatattaagaaaatgtcaaatggtaaaattcaagcatatcagaag |
227 |
Q |
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| T |
51579185 |
catccgatgccggctgccttgaatccagcacgcacaccttctgcatattaagaaaatgtcaaatggtaaaattcaagcatatcagaag |
51579272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 54126660 - 54126696
Alignment:
| Q |
65 |
aaaaacacctaagaaaatgcagctaagttttgtccat |
101 |
Q |
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| T |
54126660 |
aaaaacacctaaggaaatgcacctaagttttgtccat |
54126696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 303433 - 303476
Alignment:
| Q |
152 |
gctgccttgaatccagcacgcacaccttctgcatattaagaaaa |
195 |
Q |
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| T |
303433 |
gctgccttgaatccagcacgcacaccttctgcatttcaagaaaa |
303476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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