View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0843_low_23 (Length: 285)
Name: NF0843_low_23
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_low_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 37 - 277
Target Start/End: Original strand, 45894593 - 45894833
Alignment:
| Q |
37 |
gtgaaatttcatacacacttcagcccgtactattcatcattttccaaatatatattatccatttaatggtttaaatctgcagaattttatgcatatacca |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | |
|
|
| T |
45894593 |
gtgaaatttcgtacacacttcagcccgtactatttatcatttttcaaatatatattatccatttaatggtttaaatctgcagaatgttatgcatttacta |
45894692 |
T |
|
| Q |
137 |
ggaaacttccatttaaaaagtgctatcgttagcaggttcaaccactccacnnnnnnngtaagatcgttccttaattaaattaaactaaaccattctgtcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45894693 |
ggaaacttccatttaaaaagtgctatcgtttgcaggttcaaccactccacaaaaaaagtaagatcgttccttaattaaattaaactaaaccattctgtcc |
45894792 |
T |
|
| Q |
237 |
attatctattatatatataagtcctcatcatctttcatctc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45894793 |
attatctattatatatataagtcctcatcatctttcatctc |
45894833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 24435227 - 24435184
Alignment:
| Q |
38 |
tgaaatttcatacacacttcagcccgtactattcatcattttcc |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24435227 |
tgaaatttcatacacacttcagcccgtactatttatcattttcc |
24435184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 7114917 - 7114876
Alignment:
| Q |
40 |
aaatttcatacacacttcagcccgtactattcatcattttcc |
81 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
7114917 |
aaatttcgtacacacttcagcccgtactatttatcattttcc |
7114876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University