View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_low_28 (Length: 251)
Name: NF0843_low_28
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 40395502 - 40395280
Alignment:
| Q |
29 |
aacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagatcctttagacagtgaatatgagatnnnnnnncactga |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40395502 |
aacaagttggtaattccttttgtgtaaagatttccatcttgggaaatgtatcttccatatagatcctttagacagtgaatatgagataaaaaaacactga |
40395403 |
T |
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| Q |
129 |
cagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacctcatattgacatttgacaggtatctgttatggcttat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395402 |
cagattgaaatgattcaaatgtcactacaccaaacaaatttccttaaggctataagacacacctcatattgacatttgacaggtatctgttatggcttat |
40395303 |
T |
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| Q |
229 |
tataatagtaaaggaacctactt |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
40395302 |
tataatagtaaaggaacctactt |
40395280 |
T |
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