View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0843_low_9 (Length: 351)
Name: NF0843_low_9
Description: NF0843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0843_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 2289361 - 2289647
Alignment:
| Q |
6 |
agcagcacagaaaagttaagggcactaagtattgataaagtgcatataagaacctaactaccaagctttgcnnnnnnnnnnn---gaagcaccaagtatt |
102 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||| ||||||| |
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| T |
2289361 |
agcaccacaaaaaagttaagggcacaaagtattgataaagtgcatataaaaagcttactaccaagctttgcaacaaaaaaaaaaagaagcactaagtatt |
2289460 |
T |
|
| Q |
103 |
aactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaattgtttgctat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2289461 |
aactagtgatactaagctacttcattgagcaaagctccaaataacactttcattatcaaccattttcttcacctgttcatcaccttgaactgtttgctat |
2289560 |
T |
|
| Q |
203 |
tcatcacttgctgaaatttcattcttaccatgaataatatcttcaacatt---actcactttctcagcacctgcgctttcctctgcg |
286 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
2289561 |
tcatcacttgctgaaatttcattcttaccattaataatatcttcaacattgagactcactttctcagcaccttcgctttcctctgcg |
2289647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 10397676 - 10397612
Alignment:
| Q |
283 |
tgcgaggtctgttgtttagattttatttcctggttattgacaagtaacaactgtatagtagtagt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10397676 |
tgcgaggtctgttgtttagattttatttcctggttattgacaagtaacaactgtatagtagtagt |
10397612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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