View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0844-INSERTION-10 (Length: 578)
Name: NF0844-INSERTION-10
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844-INSERTION-10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 42740902 - 42741474
Alignment:
| Q |
1 |
gctcccccttgccacccc-cagttccgccactgctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctt |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
42740902 |
gctcccccttgccaccccccagttccgccactgctccacatctggacatgcaaagttgtgactcatgaaacataatgctgcacgccattaaattatcctt |
42741001 |
T |
|
| Q |
100 |
tgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgc |
199 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42741002 |
tgacagcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaaatagcattaaagttatgc |
42741101 |
T |
|
| Q |
200 |
acctcttgggtaaacatcaactgattacccgatccgaataaccaccgataggatcaagccttcactgccaataatctttacaattattatgctgcagaag |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741102 |
tcctcttgggtaaacatcaactgattacccgagccgaataaccaccgatagaattaagccttcactgccaataatctttacaattattatgctgcagaag |
42741201 |
T |
|
| Q |
300 |
taaaatcctaccaaaatgttgtatttcctttatagatcagtataaaagatttttattaacggcatatatatttttatttgaaggaatttttaacgttaca |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
42741202 |
taaaatcctaccaaaatgttgtatttcctttatagatcagtattgaagatttttattaacggc----atatttttatttgaaggaatttttaacgttaca |
42741297 |
T |
|
| Q |
400 |
gtgcttaaatataggtaagtaatattgaatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatctta |
499 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42741298 |
gtgcttaaatataggtaagtaatattgaatatgggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatctta |
42741397 |
T |
|
| Q |
500 |
tgtttggttaagttgtacaatttgaaccataaccgagaacgtaatgattcaatattctttacttattttcttgaaacta |
578 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
42741398 |
tgtttgtttaagttgtacaatttgaaccataaccgagaacgt-atgattcaatattctttactta-tttcttgaaacta |
42741474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Original strand, 21745047 - 21745594
Alignment:
| Q |
1 |
gctcccccttgccaccccc-agttccgccactgctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctt |
99 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |
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|
| T |
21745047 |
gctcccccttgccaccccccagttccgccactgctccatatccagacatgcaaagttgtgactcatgagatataatgccgcacgccatcaaattatcctt |
21745146 |
T |
|
| Q |
100 |
tgactgcaacctatttcgaagaagtcttcaagctagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgc |
199 |
Q |
| |
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|||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21745147 |
tgacaacaacctattttgaagaagtctccaaactagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgc |
21745246 |
T |
|
| Q |
200 |
acctcttgggtaaacatcaactgattacccgatccgaataaccaccgataggatcaagccttcactgccaataatctttacaattattatgctgcagaag |
299 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
21745247 |
acctcctaggtaaacatcaactgattacccgagccgaataaccaccgataggatcaagcct-----gtcaataatctttacaattattatgctgcagaag |
21745341 |
T |
|
| Q |
300 |
taaaatcctaccaaaatgttgtatttcctttatagatcagtataaaagatttttattaacggcatatatatttttatttgaaggaatttttaacgttaca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
21745342 |
taaaatcctaccaaaatgttgtatttcctttatagatcagtatagaagatttttattaacggc----atatttttatttgaaggaatttttaacgttaca |
21745437 |
T |
|
| Q |
400 |
gtgcttaaatataggtaagtaatattgaatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatctta |
499 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21745438 |
gtgcttaaatataggtaag--------------------taataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatctta |
21745517 |
T |
|
| Q |
500 |
tgtttggttaagttgtacaatttgaaccataaccgagaacgtaatgattcaatattctttacttattttcttgaaacta |
578 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
21745518 |
tgtttgtttaagttgtacaatttgaaccataaccgagaacgt-atgattcaatattctttactta-tttcttgaaacta |
21745594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3173881 - 3173849
Alignment:
| Q |
1 |
gctcccccttgccacccccagttccgccactgc |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3173881 |
gctcccccttgccacccccagttccgccactgc |
3173849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 27602104 - 27601933
Alignment:
| Q |
33 |
ctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagc |
132 |
Q |
| |
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||||||||||||||| |||||| | ||||| ||| | ||||||| || ||||| |||||||||| ||||| ||||||||||||||||| ||| ||||| |
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| T |
27602104 |
ctccacatccggacacgcaaagctatgacttgtgaaatataatgtcgcgcgccactaaattatcccttgacgacaacctatttcgaagaactctccaagc |
27602005 |
T |
|
| Q |
133 |
tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctc |
204 |
Q |
| |
|
|| |||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
27602004 |
aagaatagaaaccttcaaggaaacctgtttgtgccaaattaaatctgaagtagcattagagttatgcacctc |
27601933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 2820797 - 2820756
Alignment:
| Q |
89 |
aaattatcctttgactgcaacctatttcgaagaagtcttcaa |
130 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
2820797 |
aaattatcctttgatggcaaccaatttcgaagaagtcttcaa |
2820756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18886328 - 18886296
Alignment:
| Q |
1 |
gctcccccttgccacccccagttccgccactgc |
33 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
18886328 |
gctcccccttgccaccctcagttccgccactgc |
18886296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42004911 - 42004879
Alignment:
| Q |
1 |
gctcccccttgccacccccagttccgccactgc |
33 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
42004911 |
gctcccccttaccacccccagttccgccactgc |
42004879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 28308447 - 28308637
Alignment:
| Q |
33 |
ctccacatccggacatgcaaagttgtgactcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaagc |
132 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||| ||||||| | |||| ||||||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
28308447 |
ctccacatccggacacgcaaagttgtgacttgt-agatataatgtcacgtgccaccaaattatcctttgacagcaacctattccgaagaagtcttcaagc |
28308545 |
T |
|
| Q |
133 |
tagcatagaaactttcttgaaaacatgtttgtgccaaattaaatctgaagtagcattaaagttatgcacctcttgggtaaacatcaactgat |
224 |
Q |
| |
|
|| |||||||| ||| | ||| || |||||||||||| ||||||||||||||||| |||||| || ||| || ||| ||| |||||||| |
|
|
| T |
28308546 |
aagaatagaaaccttcaagggaacctgcttgtgccaaattcaatctgaagtagcattagagttatacatctcctgagtagacaacaactgat |
28308637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 14125112 - 14125143
Alignment:
| Q |
1 |
gctcccccttgccacccccagttccgccactg |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14125112 |
gctcccccttgccacccccagttccgccactg |
14125143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 10389090 - 10389021
Alignment:
| Q |
62 |
tcatgagacataatgttgcacgccattaaattatcctttgactgcaacctatttcgaagaagtcttcaag |
131 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||| |||||||| | | |||||| ||||||||||| |||| |
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|
| T |
10389090 |
tcatgagagataatgttgcgcgccaccaaattaccctttgacggtagcctattccgaagaagtctccaag |
10389021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 30626332 - 30626368
Alignment:
| Q |
65 |
tgagacataatgttgcacgccattaaattatcctttg |
101 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
30626332 |
tgagaaataatgttgcacgccattagattatcctttg |
30626368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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