View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844-INSERTION-11 (Length: 544)
Name: NF0844-INSERTION-11
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844-INSERTION-11 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 43436800 - 43437323
Alignment:
| Q |
1 |
gatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattcctacataaacaaagaaagctgatataagcatttt-tcggaaaaatttgtctc |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43436800 |
gatcgaatagaaaccttcctagaaagaggttgccgagcttcatcattcctatataaacaaagaaagctgatataagcattttttcggaaaaatttgtctc |
43436899 |
T |
|
| Q |
100 |
ttagcataagtcctacttcaaattactagatacacttgttatttttcagatatacccctacttaatactaataacttgggagacaagaagtcatagttga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43436900 |
ttagcataagtcctacttcaaattactagatacacttgttatttttcagatatacccctacttaatattaataacttgggagacaagaagtcatagttga |
43436999 |
T |
|
| Q |
200 |
acacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctatttttcttaatatgcgtgaaaattgc |
299 |
Q |
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| T |
43437000 |
acacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaatacattatctatttttcttaatatgcgtgaaaatcgc |
43437099 |
T |
|
| Q |
300 |
aaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaactggtacatcagatctggaatcaacatctccatcgcc |
399 |
Q |
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| T |
43437100 |
aaaaggggcttataataaatgagagaggtaataaaggaaatactaacaacaacgaatcatcaacaggtacatcagatctggaatcaacatctccatcgcc |
43437199 |
T |
|
| Q |
400 |
tctttcaaaaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttctttccacgctatattccccag |
499 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43437200 |
tctttc-agaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttccacgcgtcaactctttctttccacgctatatttcccag |
43437298 |
T |
|
| Q |
500 |
tcctgcatccgcaaccctggtattt |
524 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
43437299 |
tcctgcatccgcaaccctggtattt |
43437323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 164 - 498
Target Start/End: Original strand, 13827361 - 13827683
Alignment:
| Q |
164 |
atactaataacttgggagacaagaagtcatagttgaacacaaaatctatatacaacggggtattttatgagcatttatatatcaaatgaacatattaaat |
263 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| |||| |||| || |||||| | ||||||| ||||| ||| ||| ||| |
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| T |
13827361 |
atactaataacttgggagacaagaagttagagttgaacacatcatctgtatataa-----------atgagcctctatatatgaaatggacacattgaat |
13827449 |
T |
|
| Q |
264 |
acattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataaatgtgagaggtaataaaggaaatactaacaacaacgaatcatcaac |
363 |
Q |
| |
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|||||||||| ||||||| |||| |||||||||| ||||||||| |||||||||| |||| || ||||||||||||| ||||||| ||||||||| | |
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| T |
13827450 |
acattatctacttttcttgatatatgtgaaaattggaaaaggggcatataataaataacagagatagtaaaggaaatactcacaacaatgaatcatcagc |
13827549 |
T |
|
| Q |
364 |
tggtacatcagatctggaatcaacatctccatcgcctctttcaaaaagaagcttggcttgagctcattggaacagcattcttttccttcttcatcttcca |
463 |
Q |
| |
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| |||||||||||| ||||| ||||||| | |||||||| | ||| |||||||| || |||||| ||| ||||||||||||| |||||||||||| |
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| T |
13827550 |
aaggacatcagatctgccatcaatatctccagcccctctttc-agaagcagcttggcctgtgctcatcggagcagcattcttttctggcttcatcttcca |
13827648 |
T |
|
| Q |
464 |
cgcgtcaactctttctttccacgctatattcccca |
498 |
Q |
| |
|
|||||||||||||| |||| |||| ||| |||| |
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|
| T |
13827649 |
gccgtcaactctttctctccatgctacattgccca |
13827683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13826801 - 13826865
Alignment:
| Q |
5 |
gaatagaaaccttcctagaaagaggttgccgagcttcatcattcctacataaacaaagaaagctga |
70 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| ||| |||||||||| |||| |
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|
| T |
13826801 |
gaatagaaaccttcctggaaagaggctgccgagcttcatcattcctgcat-aacaaagaaaactga |
13826865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 43947776 - 43947728
Alignment:
| Q |
5 |
gaatagaaaccttcctagaaagaggttgccgagcttcatcattcctaca |
53 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| |||||||| |||| |
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| T |
43947776 |
gaatagaaaccttcctggatagtggttgccgagctacatcattcataca |
43947728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 9477101 - 9477055
Alignment:
| Q |
5 |
gaatagaaaccttcctagaaagaggttgccgagcttcatcattccta |
51 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||||||| |
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|
| T |
9477101 |
gaatagaaaccttcctcgaaagtggttgtcgagcttcatcattccta |
9477055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 3865824 - 3865880
Alignment:
| Q |
261 |
aatacattatctatttttcttaatatgcgtgaaaattgcaaaaggggcttataataa |
317 |
Q |
| |
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|||||| || ||||| |||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
3865824 |
aatacactacctattcttcttaatatatgtgaaaattgcaaaagaggcttataataa |
3865880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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