View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844-INSERTION-5 (Length: 684)

Name: NF0844-INSERTION-5
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844-INSERTION-5
NF0844-INSERTION-5
[»] chr6 (16 HSPs)
chr6 (281-477)||(2986761-2986957)
chr6 (483-684)||(2987015-2987228)
chr6 (281-477)||(2928127-2928318)
chr6 (312-477)||(2935663-2935828)
chr6 (285-442)||(2952983-2953140)
chr6 (483-684)||(2985959-2986155)
chr6 (201-279)||(3002848-3002938)
chr6 (340-389)||(2955324-2955373)
chr6 (285-357)||(2955220-2955292)
chr6 (202-239)||(2974907-2974944)
chr6 (278-323)||(3002775-3002820)
chr6 (345-447)||(2985775-2985878)
chr6 (201-239)||(2935511-2935549)
chr6 (201-239)||(2952857-2952895)
chr6 (201-239)||(2954989-2955027)
chr6 (201-237)||(2983762-2983798)
[»] scaffold0024 (3 HSPs)
scaffold0024 (278-475)||(43204-43401)
scaffold0024 (285-386)||(33991-34092)
scaffold0024 (483-522)||(33790-33829)
[»] chr7 (3 HSPs)
chr7 (311-477)||(3340056-3340223)
chr7 (201-239)||(3339903-3339941)
chr7 (550-584)||(3340362-3340396)
[»] chr8 (1 HSPs)
chr8 (444-474)||(7473110-7473140)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 281 - 477
Target Start/End: Original strand, 2986761 - 2986957
Alignment:
Q  281 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 380  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||    
T  2986761 tgagtttaatgtaacatgatttatgttttgataccttaattgaaaagtgatttatcattattcaagttgtttggataatttaaatcaaaattatttttga 2986860  T
Q  381 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 477  Q
     |||||||| |   || |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  2986861 atgtgaattgacgaaatttagtttatataattgaaaaagaagaggaacatcgataaaataagagagtgcaacacttgagtaaatggtaaatttatta 2986957  T

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Target: chr6; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 483 - 684
Target Start/End: Original strand, 2987015 - 2987228
Alignment:
Q  483 tccaaccttgaatcgattttggaacaacaatcacttaaaaattatttagagtttccac-gacaagttgatttagtacataactcacgtttgatcttgtga 581  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2987015 tccaaccttgaatcgaatttggaacaacaatcacttaaaa-ttattaacagtttccattgacaagttgatttagtacataactcacgtttgatcttgtga 2987113  T
Q  582 acttacgtcgcatgtcttccaac-------tcacaaccaaaaaagcaccacattaatta-----tttttatcatatatccctacatttatgctctcactc 669  Q
    |||||||||   |||||||||||       |||||||||||||||||| ||||||||||     |||||| ||||||||| ||||||||||||||||| |    
T  2987114 acttacgtcaagtgtcttccaactcacaagtcacaaccaaaaaagcacgacattaattattatttttttaccatatatccttacatttatgctctcaccc 2987213  T
Q  670 tccattttacttaaa 684  Q
    |||||||||||||||    
T  2987214 tccattttacttaaa 2987228  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 281 - 477
Target Start/End: Original strand, 2928127 - 2928318
Alignment:
Q  281 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 380  Q
    |||||||||  ||| |||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  2928127 tgagtttaagttaaggtgacttatgttttgataccttgattgaaaagtgatttttcataattcaagttgtttagataatttagatcaaaattacttttga 2928226  T
Q  381 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 477  Q
    ||||||||| |   ||| | |||| ||||||| |||||||||||| || |  | ||||||||||||||     ||||||||||||||||||||||||    
T  2928227 gtgtgaatttaccaaaactggtttgaatgattaaaaaagaagaggcacgttaataaaataagagagtg-----cttgagtaaatggtaaattgatta 2928318  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 312 - 477
Target Start/End: Original strand, 2935663 - 2935828
Alignment:
Q  312 taccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgat 411  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||  |||||| |||||||| ||  |||   |||| ||||||    
T  2935663 taccttgattgaaaagtgatttttcataattcatgttgtttggataatttagatcaaaattgtttttgaatgtgaatttatcaaaacgcgtttgaatgat 2935762  T
Q  412 tgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 477  Q
    | ||||||||||||||| || | ||||||||| | || ||||||||| ||||||||||||||||||    
T  2935763 taaaaaagaagaggaacgtcaataaaataagacaatgaaacacttgactaaatggtaaattgatta 2935828  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 285 - 442
Target Start/End: Original strand, 2952983 - 2953140
Alignment:
Q  285 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 384  Q
    ||||||||| | ||||||||| ||  ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || ||    
T  2952983 tttaatgtatcatgatttatgtttggatatcttgattgaaaagtgatttttcataattcaagttgtttggagaatttagatcaaaattacttttaagagt 2953082  T
Q  385 gaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataag 442  Q
    ||||| ||  ||| |||||| ||||||| |||||||||||||||||| | ||||||||    
T  2953083 gaatttatcaaaactagtttgaatgattaaaaaagaagaggaacatccataaaataag 2953140  T

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Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 483 - 684
Target Start/End: Original strand, 2985959 - 2986155
Alignment:
Q  483 tccaaccttgaatcgattttggaacaacaatcacttaaaaattatttagagtttccacgacaagttgatttagtacataactcacgtttgatcttgtgaa 582  Q
    ||||||||| |||| | ||||||||||||||||| ||||| ||| |||||||  |||  |||| ||||||||| ||||||||| ||||||| | | ||||    
T  2985959 tccaaccttaaatccagtttggaacaacaatcacataaaa-ttagttagagtccccaa-acaatttgatttagaacataactctcgtttgaccctatgaa 2986056  T
Q  583 cttacgtcgcatgtcttccaactcacaaccaaaaaagcaccacattaattatttttatcatatatccctacatttatgctctcactc-tccattttactt 681  Q
    ||||||||   || ||||||||||||||||||| |||||| ||    ||  ||||| ||||||| ||||||||||||  |||||||| ||||||||||||    
T  2986057 cttacgtcaagtgccttccaactcacaaccaaacaagcacgac----atcttttttttcatatacccctacatttatagtctcactcttccattttactt 2986152  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 3002938 - 3002848
Alignment:
Q  201 caaaatctaggggtgcaggtagaaactccaaactaatgt------------gtgtttggttccacggtgataacaattgtttttgaatgaa 279  Q
    ||||||||||||||||||||||||||| |||||||||||            | ||||||||||||||||||||||||||||||||||||||    
T  3002938 caaaatctaggggtgcaggtagaaacttcaaactaatgtcgtgtctcgcgtgcgtttggttccacggtgataacaattgtttttgaatgaa 3002848  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 2955324 - 2955373
Alignment:
Q  340 attcaagttgtttggataatttagatccaaattacttttgagtgtgaatt 389  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  2955324 attcaagttgtttggataatttagatcaaaattacttctgaatgtgaatt 2955373  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 2955220 - 2955292
Alignment:
Q  285 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggata 357  Q
    ||||||||||| | ||||||| |   |||||||||||||||||||||||||||| ||||||||  ||||||||    
T  2955220 tttaatgtaacataatttatgttaggataccttaattgaaaagtgatttttcataattcaagtgttttggata 2955292  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 2974907 - 2974944
Alignment:
Q  202 aaaatctaggggtgcaggtagaaactccaaactaatgt 239  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2974907 aaaatctaggggtgcaggtagaaactcctaactaatgt 2974944  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 3002820 - 3002775
Alignment:
Q  278 aaatgagtttaatgtaacgtgatttatgatttaataccttaattga 323  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  3002820 aaatgagtttagtgtaacatgatttatgttttaataccttaattga 3002775  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 447
Target Start/End: Original strand, 2985775 - 2985878
Alignment:
Q  345 agttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgattgaaaa-agaagaggaacatcgacaaaataaga 443  Q
    |||||||||| ||||||| ||| |||||||| ||||||||| ||| |   ||| |||||| ||||||| |||| ||||||||| |||| |  ||||||||    
T  2985775 agttgtttgggtaatttaaatcgaaattactcttgagtgtgcatttaccaaaactagtttgaatgattaaaaaaagaagaggagcatcaatcaaataaga 2985874  T
Q  444 gagt 447  Q
    ||||    
T  2985875 gagt 2985878  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 2935511 - 2935549
Alignment:
Q  201 caaaatctaggggtgcaggtagaaactccaaactaatgt 239  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  2935511 caaaatctaggggtgcaggtagaaactcataactaatgt 2935549  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 2952857 - 2952895
Alignment:
Q  201 caaaatctaggggtgcaggtagaaactccaaactaatgt 239  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  2952857 caaaatctaggggtgcaggtagaaattcctaactaatgt 2952895  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 2954989 - 2955027
Alignment:
Q  201 caaaatctaggggtgcaggtagaaactccaaactaatgt 239  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  2954989 caaaatctagggttgcaggtagaaactcctaactaatgt 2955027  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 2983762 - 2983798
Alignment:
Q  201 caaaatctaggggtgcaggtagaaactccaaactaat 237  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  2983762 caaaatctaggggtgcaggtaaaaactcctaactaat 2983798  T

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Target: scaffold0024 (Bit Score: 106; Significance: 1e-52; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 278 - 475
Target Start/End: Complemental strand, 43401 - 43204
Alignment:
Q  278 aaatgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttt 377  Q
    |||||| |||||| |||  ||||||||| || |||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  43401 aaatgactttaatataatatgatttatgtttgaatatcttgattgaaaaatgatttttcataattcaagttgtttggataattttgatcgaaatgacttt 43302  T
Q  378 tgagtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgat 475  Q
    | |||||||||| ||  ||| |||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||    
T  43301 taagtgtgaatttatcaaaactagtttgaatgattgaaaaagaagaggaacatcaataaaataagagactgcaacacttgagtaaatggtgaattgat 43204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 34092 - 33991
Alignment:
Q  285 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 384  Q
    ||||||||||| ||||||||  ||  ||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  34092 tttaatgtaacatgatttatatttggatagcttgattgaaaagtgatttttcataattcaagttatttggataatttagatcaaaattacttttgagtgt 33993  T
Q  385 ga 386  Q
    ||    
T  33992 ga 33991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 483 - 522
Target Start/End: Complemental strand, 33829 - 33790
Alignment:
Q  483 tccaaccttgaatcgattttggaacaacaatcacttaaaa 522  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  33829 tccaaccttaaatcgattttggaacaacaatcacgtaaaa 33790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 311 - 477
Target Start/End: Original strand, 3340056 - 3340223
Alignment:
Q  311 ataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatga 410  Q
    ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| ||  ||| | |||| |||||    
T  3340056 ataccttgattgaaaagtaaattttcataattcaagttgtttggataatttagattaaaattacttttgagtgtgaatttatcaaaactggttttaatga 3340155  T
Q  411 tt-gaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 477  Q
    ||  |||||||| |||||| || | |||||||||||||||||||||||| |||||| |||||||||||    
T  3340156 ttaaaaaaagaaaaggaacgtcaataaaataagagagtgcaacacttgactaaatgataaattgatta 3340223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 3339903 - 3339941
Alignment:
Q  201 caaaatctaggggtgcaggtagaaactccaaactaatgt 239  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  3339903 caaaatctaggggtgcatgtagaaactcctaactaatgt 3339941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 584
Target Start/End: Original strand, 3340362 - 3340396
Alignment:
Q  550 atttagtacataactcacgtttgatcttgtgaact 584  Q
    |||||||||||||||||||||||||| ||||||||    
T  3340362 atttagtacataactcacgtttgatcatgtgaact 3340396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 474
Target Start/End: Original strand, 7473110 - 7473140
Alignment:
Q  444 gagtgcaacacttgagtaaatggtaaattga 474  Q
    |||||||||||||||||||||||||||||||    
T  7473110 gagtgcaacacttgagtaaatggtaaattga 7473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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