View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844-INSERTION-8 (Length: 634)

Name: NF0844-INSERTION-8
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844-INSERTION-8
NF0844-INSERTION-8
[»] chr7 (2 HSPs)
chr7 (1-415)||(46184049-46184484)
chr7 (416-634)||(46183593-46183810)
[»] chr1 (1 HSPs)
chr1 (4-85)||(37293804-37293885)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 46184484 - 46184049
Alignment:
Q  1 aatagtccttgaacaaactcatatcttttttccttttcttccttatccttgactgacaaggtaggcgtctccacatttctgaacaaaaataatatgttat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46184484 aatagtccttgaacaaactcacatcttttttccttttcttccttatccttgactgacaaggtaggcgtctccacatttctgaacaaaaataatatgttaa 46184385  T
Q  101 aaactagaaggtacaaggagacagttaagaatgcattgcttgatgtatgctgtcttaaaacatgccgttagcaaggaacaacaactcattcttttgcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46184384 aaactagaaggtacaaggagacagttaagaatgcattgcttgatgtatgctgtcttaaaacatgccgttagcaaggaacaacaactcattcttttgcaag 46184285  T
Q  201 aag---------------------gcacagatatgacattgtttttaatggcatnnnnnnntcatgtttaaaacaagcagataaaaggtgcaattgttga 279  Q
    |||                     ||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||||||||||    
T  46184284 aaggcacttagattcattgaaacagcacagatatgacattgtttttaatggcataaaaaaatcatctttaaaacaagcagataaaaggtgcaattgttga 46184185  T
Q  280 atgtcggaagccataaataattccaaaatgcactatgacaacatcataaggatggaattagaggtgcaaactaagtattgtcatttccacctctctgaaa 379  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46184184 atgtcggaagctataaataattccaaaatgcactatgacaacatcataaggatggaattagaggtgcaaactaagtattgtcatttccacctctctgaaa 46184085  T
Q  380 aaagacaattaatccaatgaataaagtgatcaaccc 415  Q
    ||||||||||||||||||||||||||||||||||||    
T  46184084 aaagacaattaatccaatgaataaagtgatcaaccc 46184049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 416 - 634
Target Start/End: Complemental strand, 46183810 - 46183593
Alignment:
Q  416 ctgtccaacctcatctctcatgaattccacgcacacactctttctctctttcacattttcttattactttttctctcttggactgatggagaggaaccaa 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  46183810 ctgtccaacctcatctctcatgaattccacgcacacactctttctctctttcacattttcttattactttctctctcttggactgatggagaggaaccaa 46183711  T
Q  516 gtgctaaaagcacgaatctgatcctctggagtgctgcgcacatcgctaacacgggagaatcattgaatcccaagtccaacactgcacctgaatctaacca 615  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||| || |||||||||||||||||||||||||||||||    
T  46183710 gtgctaaaagcacgaatcagatcctctggagtgctgcgcacatcgctaacactgcagaatcattggat-ccaagtccaacactgcacctgaatctaacca 46183612  T
Q  616 atctacagaggctgtacag 634  Q
    |||||||||||||||||||    
T  46183611 atctacagaggctgtacag 46183593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 37293804 - 37293885
Alignment:
Q  4 agtccttgaacaaactcatatcttttttccttttcttccttatccttgactgacaaggtaggcgtctccacatttctgaaca 85  Q
    |||||||||||||||||| |||||||  |||| || ||||| ||||| ||||||| ||| || ||||| ||||  |||||||    
T  37293804 agtccttgaacaaactcacatcttttcgccttctcctccttgtccttaactgacatggttggtgtctctacatggctgaaca 37293885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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