View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_high_10 (Length: 433)
Name: NF0844_high_10
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 421
Target Start/End: Complemental strand, 40585471 - 40585078
Alignment:
| Q |
30 |
gtttccactttacttggtcctgtggtataacattggctgcactcttcactgttgataaaaaa-gtatatagttttgttgtacaagtgaaatatgtcaatg |
128 |
Q |
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| T |
40585471 |
gtttccactttacttggtcctgtggtataacattggctgcactcttcactgttgataaaaaaagtatatagttttgctgtacaagtgaaatatgtcaatg |
40585372 |
T |
|
| Q |
129 |
gtactcagaatttgtaatctagagatataaaaatatcattagtgtcgatgcatttgttcttgagatgtcagttcagtagtaagaatttgattttgtaact |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40585371 |
gtactcagaatttgtaatctagagatataaaaatatcattagtgtcactgtatttgttcttaagatgtcagttcagtagtaagaatttgattttgtaact |
40585272 |
T |
|
| Q |
229 |
ttaagagacgaagtttaaataatggtcaccaatgtcatattattaatgataattttgcatcctcaaatttttatttt-cnnnnnnnnnngtgtcaatggt |
327 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40585271 |
ttaagagacgaagtttaaataatggtcaccgatgtcatattattaatgataattttgcatcctcaaatttttattttaaaaaaaaaaaagtgtcaatggt |
40585172 |
T |
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| Q |
328 |
actnnnnnnnncatgaaaagtgcaagtatgtagggtcaacatactaacaaacagagaagaggaacaaac-aaaataaaatctccaggaatatatt |
421 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40585171 |
act-aaaaaaacatgaaaagtgcaagtatgtagggtcaacatactaacaaacagagaagaggaacaaacaaaaataaaatctccaggaatatatt |
40585078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 5399871 - 5399921
Alignment:
| Q |
199 |
gttcagtagtaagaatttgattttgtaactttaagagacgaagtttaaata |
249 |
Q |
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||||||| |||||| ||||| |||||||| |||||||||||||||| |||| |
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| T |
5399871 |
gttcagtggtaagagtttgactttgtaaccttaagagacgaagtttgaata |
5399921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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