View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0844_high_16 (Length: 344)
Name: NF0844_high_16
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0844_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 24276515 - 24276808
Alignment:
| Q |
30 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatca |
129 |
Q |
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| T |
24276515 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatca |
24276614 |
T |
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| Q |
130 |
acaagttgtccacttgacagttttatctgagcattatatttgataacattaattagattaacaacaacacaaagaatgtcatgctaaaattcacaaagat |
229 |
Q |
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| T |
24276615 |
acaagttgtccacttgacagttttatctgtgcattatatttgataacattaattagattaacaacaacacaaagaatgtcatgctaaaattcacaaagat |
24276714 |
T |
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| Q |
230 |
ttcagtttaccttttcctctggaagatcacgccaatcacaacctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
323 |
Q |
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| T |
24276715 |
ttcagtttaccttttcctctggaagatcacgccaatcacaacctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
24276808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 20159675 - 20159965
Alignment:
| Q |
30 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatca |
129 |
Q |
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| T |
20159675 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattggttatgcctcttagcagtgtttggcaagcaccatggtatcaaatca |
20159774 |
T |
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| Q |
130 |
acaagttgtccacttgacagttttatctgagcattatatttgataacattaattagattaacaacaacacaaagaatgtcatgctaaaattcacaaagat |
229 |
Q |
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| T |
20159775 |
acaagttgtccacttgacagctttatctgtgcattatattcgacaacgttaattagatt---aacaacacaaaaaatgtcatgctaaaattcacaaagat |
20159871 |
T |
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| Q |
230 |
ttcagtttaccttttcctctggaagatcacgccaatcacaacctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
323 |
Q |
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| T |
20159872 |
ttcagtttaccttttcatctggaagatcgcgccaatcacaacctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
20159965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 323
Target Start/End: Original strand, 8048048 - 8048340
Alignment:
| Q |
30 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatca |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
8048048 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgttaggcaagcaccacggaatcaaatca |
8048147 |
T |
|
| Q |
130 |
acaagttgtccacttgacagttttatctgagcattatatttgataacattaattagattaacaacaacacaaagaatgtcatgctaaaattcacaaagat |
229 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | ||| ||| |||||||||||||||||||||||||| |
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| T |
8048148 |
acaagttgtccacttgacagttttatctgtacattatatttgataacatcaattagattaacagc-acaaaaaaaatgtcatgctaaaattcacaaagat |
8048246 |
T |
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| Q |
230 |
ttcagtttaccttttcctctggaagatcacgccaatcacaacctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
323 |
Q |
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| T |
8048247 |
ttcagtttaccttttcatctggaagatcacgccaatcacaacctggtctcttgggaattttctgacaacgaatcaagttcaactcattcatctc |
8048340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 323
Target Start/End: Complemental strand, 12042724 - 12042433
Alignment:
| Q |
30 |
ggaagttggaaaatttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgtttggcaagcaccatggtatcaaatca |
129 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12042724 |
ggaagtaggaaagtttccttgccagtccaacctaccaaacagtcccttccattgattatgcctcttagcagtgtttggcaagcaccacggtatcaaatca |
12042625 |
T |
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| Q |
130 |
acaagttgtccacttgacagttttatctgagcattatatttgataacattaattagattaacaacaacacaaagaatgtcatgctaaaattcacaaagat |
229 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
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| T |
12042624 |
acaagttgtccacttgacagccttatctgtgcattatatttgataacattaattagattaaca--cgtacaaaaaatgtcatgctaaaaatcacaaagat |
12042527 |
T |
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| Q |
230 |
ttcagtttaccttttcctctggaagatcacgccaatcacaacctggtctcttgggaattttctgacatcgaatcaagttcaactcattcatctc |
323 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12042526 |
ttcagtttaccttttcatctggaagatcacgccaatcacagcctggtctcttgggaattttctgacatcgaatcaaattcaactcattcatctc |
12042433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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