View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0844_high_21 (Length: 283)

Name: NF0844_high_21
Description: NF0844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0844_high_21
NF0844_high_21
[»] chr4 (1 HSPs)
chr4 (57-250)||(27388999-27389192)
[»] chr3 (6 HSPs)
chr3 (87-250)||(25662515-25662683)
chr3 (87-250)||(25668920-25669088)
chr3 (87-250)||(25675325-25675493)
chr3 (87-250)||(25681999-25682167)
chr3 (87-250)||(25690303-25690471)
chr3 (209-249)||(29171273-29171313)
[»] chr1 (3 HSPs)
chr1 (45-250)||(29223817-29224019)
chr1 (85-249)||(8059868-8060037)
chr1 (87-250)||(51602513-51602680)
[»] chr5 (3 HSPs)
chr5 (45-248)||(25968940-25969148)
chr5 (45-250)||(38063439-38063649)
chr5 (209-250)||(31118600-31118641)
[»] chr2 (2 HSPs)
chr2 (87-250)||(34354664-34354832)
chr2 (85-161)||(32599806-32599882)
[»] chr6 (3 HSPs)
chr6 (88-185)||(34336838-34336935)
chr6 (200-249)||(2016635-2016684)
chr6 (88-157)||(21906308-21906377)
[»] chr7 (3 HSPs)
chr7 (210-250)||(48897781-48897821)
chr7 (209-249)||(29350365-29350405)
chr7 (209-250)||(42087530-42087571)
[»] chr8 (2 HSPs)
chr8 (85-179)||(1362916-1363010)
chr8 (197-235)||(40719153-40719191)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 27389192 - 27388999
Alignment:
Q  57 agagtccaccgaaaaactaagattgccgagccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagc 156  Q
    ||||||||  ||||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27389192 agagtccatagaaaaactaagattgccaagccaatcaacactcatatttccttctcgtcatgtttgattgaaatgcatctgccaattcaactttaagagc 27389093  T
Q  157 tcttgtatacggcgcaccaaggtcggcggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||| |||||||||    
T  27389092 tcttgtatacggcacaccaaggtcggcagcattgatattgattttccatgttatcatgtcaaccagagtttttaagtcactttctacttgaaga 27388999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 25662683 - 25662515
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggc--- 183  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||| | |       
T  25662683 ccaatcagcactcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtggacgaa 25662584  T
Q  184 --ggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
      | |||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  25662583 ttgccattgatattaattttccctgtgatcatgtcaaccatagtttttgagtcactttccacttgaaga 25662515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 25669088 - 25668920
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggc--- 183  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||| | |       
T  25669088 ccaatcagcactcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtggacgaa 25668989  T
Q  184 --ggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
      | |||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  25668988 ttgccattgatattaattttccctgtgatcatgtcaaccatagtttttgagtcactttccacttgaaga 25668920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 25675493 - 25675325
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggc--- 183  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||| | |       
T  25675493 ccaatcagcactcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtggacgaa 25675394  T
Q  184 --ggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
      | |||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  25675393 ttgccattgatattaattttccctgtgatcatgtcaaccatagtttttgagtcactttccacttgaaga 25675325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 25682167 - 25681999
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggc--- 183  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||| | |       
T  25682167 ccaatcagcactcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtggacgaa 25682068  T
Q  184 --ggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
      | |||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  25682067 ttgccattgatattaattttccctgtgatcatgtcaaccatagtttttgagtcactttccacttgaaga 25681999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 25690471 - 25690303
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggc--- 183  Q
    ||||||||||||  | ||||||||||| ||||| ||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||| | |       
T  25690471 ccaatcagcactcgtgtttccttctcgccatgtatgattgaaatgcaccagccaattcaactttaagagctcatgtatacggcgcaccaaggtggacgaa 25690372  T
Q  184 --ggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
      | |||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  25690371 ttgccattgatattaattttccctgtgatcatgtcaaccatagtttttgagtcactttccacttgaaga 25690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 29171273 - 29171313
Alignment:
Q  209 atcatgtcaaccaaagtttttgagtcactttccacttgaag 249  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  29171273 atcatttcaaccaaagtttttgagtcacttttcatttgaag 29171313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 29224019 - 29223817
Alignment:
Q  45 atgaatgttaaaagagtccaccgaaaaactaagattgccgagccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattc 144  Q
    ||||||||||||||||||||  ||||||||||||||| | |||||||| |         |||||||||||||||| ||||||||||| | ||| ||||||    
T  29224019 atgaatgttaaaagagtccatagaaaaactaagattggctagccaatctga--------ttccttctcgtcatgtatgattgaaatgtacctgccaattc 29223928  T
Q  145 aactttaagagctcttgtatacggcgcaccaaggtcggcgg-----cattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcacttt 239  Q
    ||||||||||||||||||||||| ||||  ||||| | |||     |||||||||||||||| ||||| ||||| ||||||| || |||||||| |||||    
T  29223927 aactttaagagctcttgtatacgacgcattaaggtggtcggattgccattgatattgattttccctgtgatcatatcaaccagagattttgagttacttt 29223828  T
Q  240 ccacttgaaga 250  Q
    |||||||||||    
T  29223827 ccacttgaaga 29223817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 8059868 - 8060037
Alignment:
Q  85 agccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcgg-- 182  Q
    ||||||||||||||||||||||| || || || || || ||||| |||| ||| || || |||||||| |||||||| ||||||| ||||||||| ||      
T  8059868 agccaatcagcacttctatttccctcgcgccaggtatggttgaattgcacctgccagtttaactttaaaagctcttgaatacggcacaccaaggtaggtg 8059967  T
Q  183 ---cggcattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaag 249  Q
        | |||| || ||||  || ||| | | ||||||||||||||||||||| |||||||| ||||||||    
T  8059968 ctttgccattaattttgacgttccctttgaccatgtcaaccaaagtttttgaatcactttctacttgaag 8060037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 51602513 - 51602680
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggcgg- 185  Q
    ||||||||||||| ||||||| || || || || ||||||||||||| |||||| ||||||||||| || | |||||| ||||| | |||||| || |      
T  51602513 ccaatcagcacttttatttccctcccgccaggtatgattgaaatgca-ctgtcagttcaactttaacaggtattgtatgcggcgtatcaaggtaggtgag 51602611  T
Q  186 ----cattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
        |||| || |  | ||| | ||| |||||||||||||| |||||||||||| ||||||||||||||    
T  51602612 ttctcattaatttcaactttccttgtaatcatgtcaaccaatgtttttgagtcattttccacttgaaga 51602680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 248
Target Start/End: Original strand, 25968940 - 25969148
Alignment:
Q  45 atgaatgttaaaagagtccaccgaaaaactaagattgccgagccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattc 144  Q
    ||||||||||||||||||||  || || |||| |||  | | ||||||||||||||||||||| || ||||| || ||||||||||||| ||| || |||    
T  25968940 atgaatgttaaaagagtccaaagagaagctaaaattagccatccaatcagcacttctatttccctcccgtcaggtatgattgaaatgcacctgccagttc 25969039  T
Q  145 aactttaagagctcttgtatacggcgcaccaaggtcggcgg-----cattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcacttt 239  Q
    |||||||| || |||||||| ||||| | ||| || || ||     |||| || || |  ||   ||| |||||||||||||||||||||||||||||||    
T  25969040 aactttaaaaggtcttgtatgcggcgtatcaaagtgggtgggttcccattaattttaaccttcattgtgatcatgtcaaccaaagtttttgagtcacttt 25969139  T
Q  240 ccacttgaa 248  Q
    ||| |||||    
T  25969140 ccatttgaa 25969148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 38063649 - 38063439
Alignment:
Q  45 atgaatgttaaaagagtccaccgaaaaactaagattgccgagccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattc 144  Q
    ||||||||||||||||||||  || || |||| |||  | | ||||||| ||||||||||||| || || || || ||||||||||||| |||  | |||    
T  38063649 atgaatgttaaaagagtccaaagagaagctaaaattagccatccaatcaacacttctatttccctcccgccaggtatgattgaaatgcacctgctagttc 38063550  T
Q  145 aactttaagagctcttgtatacggcgcaccaaggtcggcgg-----cattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcacttt 239  Q
    || ||||| || |||||||| ||||| | |||||| || ||     |||| || || | ||| | ||| ||||||||||||||||||||| |||||||||    
T  38063549 aattttaaaaggtcttgtatgcggcgaatcaaggtgggtgggttcccattaattttaactttccttgtgatcatgtcaaccaaagttttttagtcacttt 38063450  T
Q  240 ccacttgaaga 250  Q
    |||||||||||    
T  38063449 ccacttgaaga 38063439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 31118641 - 31118600
Alignment:
Q  209 atcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  31118641 atcatgtcaatcaaagtctttgagtcactttcctcttgaaga 31118600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 34354664 - 34354832
Alignment:
Q  87 ccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggcgg- 185  Q
    ||||||||||||||||||||| || || ||||| ||||||||||||| |||  | ||||||||||  || |||||||| ||||| | |||||| || |      
T  34354664 ccaatcagcacttctatttccctcccgccatgtatgattgaaatgcacctgctagttcaactttagaaggtcttgtatgcggcgtatcaaggtgggtgag 34354763  T
Q  186 ----cattgatattgatttttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
        |||| || || | ||| | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  34354764 ttcccattaattttaactttccttgtgatcatgtcaaccaaagtttttgagtcactttccacttgaaga 34354832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 32599806 - 32599882
Alignment:
Q  85 agccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttg 161  Q
    ||||||||  ||||||||||  | || || ||||| |||| |||||||| ||| |||||||||||||| ||||||||    
T  32599806 agccaatcgacacttctattctcatcccgccatgtatgatagaaatgcacctgccaattcaactttaaaagctcttg 32599882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 34336935 - 34336838
Alignment:
Q  88 caatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggtcggcgg 185  Q
    |||||| ||||  |||||||||||||||| || ||||||||||||| ||||||||||||||||||||  || || |||||| ||| |||||| |||||    
T  34336935 caatcaacactcttatttccttctcgtcaagtatgattgaaatgcacctgtcaattcaactttaagaattcctgaatacggtgcatcaaggtgggcgg 34336838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 2016684 - 2016635
Alignment:
Q  200 tttcctgttatcatgtcaaccaaagtttttgagtcactttccacttgaag 249  Q
    |||||| | ||| |||||||||||||| ||||||||||||||| ||||||    
T  2016684 tttcctttgatcctgtcaaccaaagttattgagtcactttccatttgaag 2016635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 21906308 - 21906377
Alignment:
Q  88 caatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagct 157  Q
    ||||| ||||||||||| || ||  | ||||| ||||||||||||| ||||||||| |||||||| ||||    
T  21906308 caatcggcacttctattcccctcctgccatgtatgattgaaatgcacctgtcaattaaactttaaaagct 21906377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 48897781 - 48897821
Alignment:
Q  210 tcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48897781 tcatgtcaaccaaagtttttgagtcactttccacttgaaga 48897821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 29350405 - 29350365
Alignment:
Q  209 atcatgtcaaccaaagtttttgagtcactttccacttgaag 249  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  29350405 atcatgtcaaccaaagtttttgagtcactttccaattgaag 29350365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 42087571 - 42087530
Alignment:
Q  209 atcatgtcaaccaaagtttttgagtcactttccacttgaaga 250  Q
    |||| |||||| ||||||||||| ||||||||||||||||||    
T  42087571 atcaagtcaacaaaagtttttgattcactttccacttgaaga 42087530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Complemental strand, 1363010 - 1362916
Alignment:
Q  85 agccaatcagcacttctatttccttctcgtcatgtttgattgaaatgcatctgtcaattcaactttaagagctcttgtatacggcgcaccaaggt 179  Q
    ||||||||||||||||||||||| ||  | || || || ||||| |||| |||  | || |||||||| |||||||| ||||||| |||||||||    
T  1363010 agccaatcagcacttctatttccctcctgccaggtatggttgaattgcaactgcaagtttaactttaaaagctcttgaatacggcacaccaaggt 1362916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 40719153 - 40719191
Alignment:
Q  197 atttttcctgttatcatgtcaaccaaagtttttgagtca 235  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  40719153 atttttcttgtgatcatgtcaaccaaagtttttgagtca 40719191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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